git.tremily.us Git - sawsim.git/search

2010-11-06	W. Trevor King	Compare theory vs. sim scaled by bin width (not theory...	commit \| commitdiff \| tree
2010-11-06	W. Trevor King	Fix Gumbel normalization in pysawsim.test.bell_rate...	commit \| commitdiff \| tree
2010-11-06	W. Trevor King	Ensure that self.headings exists in Histogram, e.g...	commit \| commitdiff \| tree
2010-11-06	W. Trevor King	For high K_0, the Bell model's <f> can be negative...	commit \| commitdiff \| tree
2010-11-06	W. Trevor King	Move Bell model unfolding rate test into pysawsim/test... W. Trevor King, Meihong Su, and Guoliang Yang...	commit \| commitdiff \| tree
2010-11-05	W. Trevor King	Use verbose nosetests (to easily ensure tests are being...	commit \| commitdiff \| tree
2010-11-05	W. Trevor King	Be less specific about fit info in pysawsim.fit.ModelFitter...	commit \| commitdiff \| tree
2010-11-05	W. Trevor King	pysawsim/fit.py should not be executable.	commit \| commitdiff \| tree
2010-11-05	W. Trevor King	Escape LaTeX backslashes in pysawsim.test.constant_rate.	commit \| commitdiff \| tree
2010-11-05	W. Trevor King	No need to give an explicit K in the pysawsim constant...	commit \| commitdiff \| tree
2010-11-05	W. Trevor King	Add doctest call to pysawsim.test.constant_rate.test...	commit \| commitdiff \| tree
2010-11-05	W. Trevor King	constant_rate.py should not be executable.	commit \| commitdiff \| tree
2010-11-05	W. Trevor King	Fixup pysawsim.test.constant_rate so it passes.	commit \| commitdiff \| tree
2010-11-05	W. Trevor King	Only log WARNING level messages (and more urgent ones...	commit \| commitdiff \| tree
2010-11-05	W. Trevor King	Force bin_edges and counts to be numy arrays in Histogram.	commit \| commitdiff \| tree
2010-11-05	W. Trevor King	ModelFitter.fit() should always return a list (even...	commit \| commitdiff \| tree
2010-11-05	W. Trevor King	Move constant unfolding rate test into pysawsim/test...	commit \| commitdiff \| tree
2010-11-05	W. Trevor King	Account for binwidth in HistogramModelFitter doctest.	commit \| commitdiff \| tree
2010-11-05	W. Trevor King	Split Histogram.analyze() out of Histogram.from_stream().	commit \| commitdiff \| tree
2010-11-05	W. Trevor King	Add pysawsim.test submodule (currently empty).	commit \| commitdiff \| tree
2010-11-04	W. Trevor King	Moved testing/common/fit.py to pysawsim/fit.py and...	commit \| commitdiff \| tree
2010-11-04	W. Trevor King	Merge remote branch 'pub/master'	commit \| commitdiff \| tree
2010-11-04	W. Trevor King	Disable epilog line wrapping in pysawsim/parameter_error.py.	commit \| commitdiff \| tree
2010-11-03	W. Trevor King	There is a Gentoo package for pbs_python: sys-cluster...	commit \| commitdiff \| tree
2010-11-03	W. Trevor King	Update Gentoo overlay info in README now that my overlay...	commit \| commitdiff \| tree
2010-11-02	W. Trevor King	Add a Gentoo package section to the README.	commit \| commitdiff \| tree
2010-11-02	W. Trevor King	Better pysawsim.sawsim.SAWSIM detection via distutils...	commit \| commitdiff \| tree
2010-11-02	W. Trevor King	Add simple setup.py for installing pysawsim.	commit \| commitdiff \| tree
2010-11-02	W. Trevor King	Use `rm -rf` instead of `rmdir` for `make clean`.	commit \| commitdiff \| tree
2010-11-02	W. Trevor King	Create new phony Makefile targets all_doc and all_bin.	commit \| commitdiff \| tree
2010-11-01	W. Trevor King	Fix : -> :: (rst markup) in README; document setupools...	commit \| commitdiff \| tree
2010-10-29	W. Trevor King	Use numpy.ndarray.sum() vs. __builtin__.sum() to compute...	commit \| commitdiff \| tree
2010-10-29	W. Trevor King	Remove cruft from testing/ in preparation for test...	commit \| commitdiff \| tree
2010-10-27	W. Trevor King	Python FAQ GIL link should point to GIL blurb, not...	commit \| commitdiff \| tree
2010-10-27	W. Trevor King	Merge remote branch 'borg/master'	commit \| commitdiff \| tree
2010-10-27	W. Trevor King	-m/--manager now defaults to auto-select.	commit \| commitdiff \| tree
2010-10-27	W. Trevor King	Add ability to import a default manager with get_manager().	commit \| commitdiff \| tree
2010-10-27	W. Trevor King	pysawsim/parameter_error.py should not be executable.	commit \| commitdiff \| tree
2010-10-27	W. Trevor King	Add support for nosetests multiprocessing plugin.	commit \| commitdiff \| tree
2010-10-27	W. Trevor King	Convert tabs to spaces in pre-commit-pysawsim-check.	commit \| commitdiff \| tree
2010-10-27	W. Trevor King	Use single-quote delimited strings when possssible.	commit \| commitdiff \| tree
2010-10-27	W. Trevor King	HistogramMatcher should not plot residual comparisons...	commit \| commitdiff \| tree
2010-10-27	W. Trevor King	Added bin/sawsim_param_error.py and pysawsim/parameter_error.py	commit \| commitdiff \| tree
2010-10-27	W. Trevor King	Assorted minor cleanups to pysawsim/parameter_scan.py.	commit \| commitdiff \| tree
2010-10-26	W. Trevor King	Remove some more velocity-specific cruft from pysawsim...	commit \| commitdiff \| tree
2010-10-26	W. Trevor King	parameter_scan.py no longer needs to import anything...	commit \| commitdiff \| tree
2010-10-24	W. Trevor King	Print the CommandError of failed sawsim executions.	commit \| commitdiff \| tree
2010-10-24	W. Trevor King	Save CommandError in failed InvokeJobs.	commit \| commitdiff \| tree
2010-10-24	W. Trevor King	Add pysawsim.invoke.CommandError.__repr__() method...	commit \| commitdiff \| tree
2010-10-24	W. Trevor King	Make pysawsim.invoke.CommandError picklable, and add...	commit \| commitdiff \| tree
2010-10-24	W. Trevor King	Fix cache shuffling (random.shuffle() shuffles in place...	commit \| commitdiff \| tree
2010-10-24	W. Trevor King	Move __version__ import from sawsim_histogram to sawsim...	commit \| commitdiff \| tree
2010-10-23	W. Trevor King	Start fleshing out "Related work" section in the manual.	commit \| commitdiff \| tree
2010-10-23	W. Trevor King	Fix some long URLs that had been wrapped by pybtex.	commit \| commitdiff \| tree
2010-10-23	W. Trevor King	Update the README with more information about the pysawsim...	commit \| commitdiff \| tree
2010-10-23	W. Trevor King	Add namedtuple definition from Python 2.6's collections...	commit \| commitdiff \| tree
2010-10-23	W. Trevor King	Move `import with_statement` from sawsim_histogram...	commit \| commitdiff \| tree
2010-10-23	W. Trevor King	Replace EXAMPLE_HISTOGRAM_FILE_CONTENTS histograms...	commit \| commitdiff \| tree
2010-10-23	W. Trevor King	Add epilogs to each OptionParser in pysawsim.	commit \| commitdiff \| tree
2010-10-23	W. Trevor King	Move sawsim running into a new pysawsim.sawsim.SawsimRunner...	commit \| commitdiff \| tree
2010-10-21	W. Trevor King	Add 'mpi' to pysawsim.manager.MANAGERS.	commit \| commitdiff \| tree
2010-10-21	W. Trevor King	Relax command-not-found doctest messages.	commit \| commitdiff \| tree
2010-10-21	W. Trevor King	Merge branch 'master' of http://www.physics.drexel...	commit \| commitdiff \| tree
2010-10-21	W. Trevor King	Fix dropped receive during ThreadManager._spawn_jobs.	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Add autogenerated .be/id-cache to .gitignore.	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Merge branch 'master' of ssh://wking@einstein/~/public_html...	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Upgrade .be bug cache to Bugs Everywhere Directory...	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Disable pysawsim.manager.subproc is multiprocessing...	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Work around namedtuple import for Pythons < 2.6.	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Also cleanup local mpd if the pysawsim nosetests fail.	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Add CC, CFLAGS, and LDFLAGS to the Makefile for easy...	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Work around missing MPD with a more elaborate pysawsim...	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Kill off worker-node implementations of master code.	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Add pysawsim.manager.mpi with an mpi4py-based manager.	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Add link to Python wiki's parallel processing page.	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Adjust pysawsim.manager.pbs to skip most doctests if...	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Remove execute permission from pysawsim/manager/pbs.py.	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Add pysawsim.manager.subproc using subprocessing.	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Add pysawsim.sawsim.main() and bin/sawsim_hist.py calling it.	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Add Histogram.to_stream() and .headings.	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Fix 'intil_state' -> 'initial_state' typo in pysawsim...	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Add Histogram.calculate_bin_edges().	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Reduce ThreadManager default worker_thread to 2.	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Add --sawsim option to velocity_dependant_scan.main().	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Allow Job status logging when .status is an Exception.	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Allow Job.__str__() to work when .id == None.	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Teardown manager after use in velocity_dependant_scan...	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Add --clean-cache option to velocity_dependant_scan...	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	No need for `if __name__ == '__main__'` in velocity_dependan...	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Rearrange velocity_dependant_scan.main() to group residual...	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Pass velocity_dependant_scan.main() --manager through...	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Reposition matplotlib.use() call in velocity_dependant_scan.py.	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Fix sawsim_histogram imports in velocity_dependant_scan.py.	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Add bin/vel_dep_scan.py calling pysawsim.velocity_dependant_...	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Add --manager option to velocity_dependant_scan.py.	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Add pysawsim.manager.SUBMODS and .IsSubclass and .get_manager.	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Transition more of the pysawsim framework into Python.	commit \| commitdiff \| tree
2010-10-20	W. Trevor King	Add pysawsim.sawsim module.	commit \| commitdiff \| tree
2010-10-19	W. Trevor King	Move 'qwait' to pysawsim.manager.pbs and add the rest...	commit \| commitdiff \| tree
2010-10-19	W. Trevor King	Fix a few deadlock errors in pysawsim.manager.thread.	commit \| commitdiff \| tree
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Sawsim, a Monte Carlo, mechanical protein unfolding simulator.

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