-% Good, very basic tutorial
-% http://cmtw.harvard.edu/Documentation/TeX/Bibtex/Example.html
-% More detail on the whole process
-% http://www.andy-roberts.net/misc/latex/latextutorial3.html
-% Entry types reference
-% http://newton.ex.ac.uk/tex/pack/bibtex/btxdoc/node6.html
-% Fields reference
-% http://newton.ex.ac.uk/tex/pack/bibtex/btxdoc/node7.html
-% Entry and field reference, but with little discussion
-% http://en.wikipedia.org/wiki/BibTeX
-% Examples of assorted styles
-% http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html
-% Assorted BibTeX tools
-% http://liinwww.ira.uka.de/bibliography/Bib.Format.html
-%
-% at some point in your latex document
-% \bibliographystyle{prsty} % Phys. Rev. style
-% other syles include abbrv, alpha, plain, unsrt
-%
-% and in your latex document where you want the bibliography:
-% \bibliography{wtk} % wtk.bib is the name of the database
-%
-% compile (using latex for example) with
-% $ latex example
-% $ bibtex example
-% $ latex example
-% $ latex example
-%
-% See possibly the Natbib package for other citation styles & link formats
-% Customize bibliography with Makebst (`latex makebst`),
-% makes .bst bib-style format files according to your specifications.
-%
-% My key style is '<lowercase-main-author-last-name><four-digit-year>',
-% which I can kindof achieve with
-% $ bibtool -f '%-1n(author)%2d(year)' wtk.bib -o wtk1.bib
-% Except any paper with more than one author has a '.ea' appended to the name
-% and bibtool removes all comments :(.
-
-% Define some Journal name shortcuts
-% @String{PRL = "Phys. Rev. Lett."}
-
-% @String{RMP = "Rev. Mod. Phys."}
-
-% @String{LANG = "Langmuir"}
-
-% @String(PNAS="Proc. Nat. Acad. Sci.")
-% @String{RSI = "Rev. Sci. Instrum."}
+@String{PRL = "Phys. Rev. Lett."}
+@String{RMP = "Rev. Mod. Phys."}
+@String{LANG = "Langmuir"}
+@String(PNAS="Proc. Nat. Acad. Sci.")
+@String{RSI = "Rev. Sci. Instrum."}
+@String{pub-NETWORK-THEORY = "Network Theory Ltd."}
+@String{pub-NETWORK-THEORY:adr = "Bristol, UK"}
+@String{BPJ = "Biophys J"
@Article{hyeon03,
author = "Changbong Hyeon and D. Thirumalai",
volume = "100",
number = "18",
pages = "10249--10253",
- keywords = "Protein Folding",
- keywords = "Proteins",
- keywords = "RNA",
- keywords = "Temperature",
- keywords = "Thermodynamics",
+ keywords = "Protein Folding; Proteins; RNA; Temperature; Thermodynamics",
abstract = "By considering temperature effects on the mechanical
unfolding rates of proteins and RNA, whose energy
landscape is rugged, the question posed in the title is
volume = "6",
number = "5",
pages = "482--486",
- keywords = "Models, Molecular",
- keywords = "Protein Binding",
- keywords = "Protein Folding",
- keywords = "Spectrum Analysis",
- keywords = "Thermodynamics",
- keywords = "beta Karyopherins",
- keywords = "ran GTP-Binding Protein",
+ keywords = "Models, Molecular; Protein Binding; Protein Folding; Spectrum Analysis; Thermodynamics; beta Karyopherins; ran GTP-Binding Protein",
abstract = "The energy landscape of proteins is thought to have an
intricate, corrugated structure. Such roughness should
have important consequences on the folding and binding
pages = "11288--11292",
doi = "10.1073/pnas.96.20.11288",
year = "1999",
+ month = sep,
+ day = 28,
abstract = "",
URL = "http://www.pnas.org/cgi/content/abstract/96/20/11288",
eprint = "http://www.pnas.org/cgi/reprint/96/20/11288.pdf",
year = "2000",
month = jun,
day = "20",
- keywords = "Animals",
- keywords = "Humans",
- keywords = "Protein Folding",
- keywords = "Proteins",
- keywords = "Spectrin",
+ keywords = "Animals; Humans; Protein Folding; Proteins; Spectrin",
abstract = "Single-molecule manipulation techniques reveal that
stretching unravels individually folded domains in the
muscle protein titin and the extracellular matrix
concentration of denaturants.",
ISSN = "0027-8424",
URL = "http://www.pnas.org/cgi/content/abstract/97/13/7254",
- URLB = "http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=16532",
eprint = "http://www.pnas.org/cgi/reprint/97/13/7254.pdf",
note = "Simulated unfolding timescales for Ig27-like S1 and S2 domains",
}
volume = "104",
number = "52",
pages = "20799--20804",
- doi = "10.1073/pnas.0701281105",
year = "2007",
month = dec,
day = "26",
- keywords = "Anisotropy",
- keywords = "Bacterial Proteins",
- keywords = "Biophysics",
- keywords = "Computer Simulation",
- keywords = "Cysteine",
- keywords = "Halorhodospira halophila",
- keywords = "Hydrogen Bonding",
- keywords = "Kinetics",
- keywords = "Luminescent Proteins",
- keywords = "Microscopy, Atomic Force",
- keywords = "Molecular Conformation",
- keywords = "Protein Binding",
- keywords = "Protein Conformation",
- keywords = "Protein Denaturation",
- keywords = "Protein Folding",
- keywords = "Protein Structure, Secondary",
+ keywords = "Anisotropy; Bacterial Proteins; Biophysics; Computer Simulation; Cysteine; Halorhodospira halophila; Hydrogen Bonding; Kinetics; Luminescent Proteins; Microscopy, Atomic Force; Molecular Conformation; Protein Binding; Protein Conformation; Protein Denaturation; Protein Folding; Protein Structure, Secondary",
abstract = "We present a comprehensive study that integrates
experimental and theoretical nonequilibrium techniques
to map energy landscapes along well defined pull-axis
pages = "3694--3699",
doi = "10.1073/pnas.96.7.3694",
year = "1999",
+ month = mar,
+ day = 30,
URL = "http://www.pnas.org/cgi/content/abstract/96/7/3694",
eprint = "http://www.pnas.org/cgi/reprint/96/7/3694.pdf",
}
volume = "87",
number = "4",
pages = "2630--2634",
- keywords = "Elasticity",
- keywords = "Enzyme Activation",
- keywords = "Micromanipulation",
- keywords = "Microscopy, Atomic Force",
- keywords = "Models, Chemical",
- keywords = "Models, Molecular",
- keywords = "Multiprotein Complexes",
- keywords = "Nuclear Proteins",
- keywords = "Physical Stimulation",
- keywords = "Protein Binding",
- keywords = "Stress, Mechanical",
- keywords = "Structure-Activity Relationship",
- keywords = "beta Karyopherins",
- keywords = "ran GTP-Binding Protein",
+ keywords = "Elasticity; Enzyme Activation; Micromanipulation; Microscopy, Atomic Force; Models, Chemical; Models, Molecular; Multiprotein Complexes; Nuclear Proteins; Physical Stimulation; Protein Binding; Stress, Mechanical; Structure-Activity Relationship; beta Karyopherins; ran GTP-Binding Protein",
abstract = "The limitations imposed on the analyses of complex
chemical and biological systems by ensemble averaging
can be overcome by single-molecule experiments. Here,
volume = "10",
number = "7",
pages = "553--557",
- keywords = "Guanosine Diphosphate",
- keywords = "Guanosine Triphosphate",
- keywords = "Microscopy, Atomic Force",
- keywords = "Protein Binding",
- keywords = "Protein Conformation",
- keywords = "beta Karyopherins",
- keywords = "ran GTP-Binding Protein",
+ keywords = "Guanosine Diphosphate; Guanosine Triphosphate; Microscopy, Atomic Force; Protein Binding; Protein Conformation; beta Karyopherins; ran GTP-Binding Protein",
abstract = "Several million macromolecules are exchanged each
minute between the nucleus and cytoplasm by
receptor-mediated transport. Most of this traffic is
volume = "90",
number = "4",
pages = "L33--L35",
- keywords = "Models, Molecular",
- keywords = "Protein Folding",
- keywords = "Proteins",
- keywords = "Thermodynamics",
+ keywords = "Models, Molecular; Protein Folding; Proteins; Thermodynamics",
abstract = "The protein folding process is described as diffusion
on a high-dimensional energy landscape. Experimental
data showing details of the underlying energy surface
volume = "92",
number = "6",
pages = "2054--2061",
- keywords = "Computer Simulation",
- keywords = "Models, Chemical",
- keywords = "Models, Molecular",
- keywords = "Models, Statistical",
- keywords = "Monte Carlo Method",
- keywords = "Motion",
- keywords = "Protein Conformation",
- keywords = "Protein Denaturation",
- keywords = "Protein Folding",
- keywords = "Ubiquitin",
+ keywords = "Computer Simulation; Models, Chemical; Models, Molecular; Models, Statistical; Monte Carlo Method; Motion; Protein Conformation; Protein Denaturation; Protein Folding; Ubiquitin",
abstract = "The mechanical unfolding of proteins under a
stretching force has an important role in living
systems and is a logical extension of the more general
volume = "11",
number = "12",
pages = "2759--2765",
- keywords = "Computer Simulation",
- keywords = "Models, Molecular",
- keywords = "Monte Carlo Method",
- keywords = "Protein Folding",
- keywords = "Protein Structure, Tertiary",
- keywords = "Proteins",
+ keywords = "Computer Simulation; Models, Molecular; Monte Carlo Method; Protein Folding; Protein Structure, Tertiary; Proteins",
abstract = "The mechanical resistance of a folded domain in a
polyprotein of five mutant I27 domains (C47S, C63S
I27)(5)is shown to depend on the unfolding history of
volume = "83",
number = "1",
pages = "458--472",
- keywords = "Amino Acid Sequence",
- keywords = "Dose-Response Relationship, Drug",
- keywords = "Kinetics",
- keywords = "Magnetic Resonance Spectroscopy",
- keywords = "Models, Molecular",
- keywords = "Molecular Sequence Data",
- keywords = "Monte Carlo Method",
- keywords = "Muscle Proteins",
- keywords = "Mutation",
- keywords = "Peptide Fragments",
- keywords = "Protein Denaturation",
- keywords = "Protein Folding",
- keywords = "Protein Kinases",
- keywords = "Protein Structure, Secondary",
- keywords = "Protein Structure, Tertiary",
- keywords = "Proteins",
- keywords = "Thermodynamics",
+ keywords = "Amino Acid Sequence; Dose-Response Relationship, Drug; Kinetics; Magnetic Resonance Spectroscopy; Models, Molecular; Molecular Sequence Data; Monte Carlo Method; Muscle Proteins; Mutation; Peptide Fragments; Protein Denaturation; Protein Folding; Protein Kinases; Protein Structure, Secondary; Protein Structure, Tertiary; Proteins; Thermodynamics",
abstract = "It is still unclear whether mechanical unfolding
probes the same pathways as chemical denaturation. To
address this point, we have constructed a concatamer of
volume = "85",
number = "1",
pages = "5--15",
- keywords = "Computer Simulation",
- keywords = "Crystallography",
- keywords = "Energy Transfer",
- keywords = "Kinetics",
- keywords = "Lasers",
- keywords = "Micromanipulation",
- keywords = "Microscopy, Atomic Force",
- keywords = "Models, Molecular",
- keywords = "Molecular Conformation",
- keywords = "Motion",
- keywords = "Muscle Proteins",
- keywords = "Nanotechnology",
- keywords = "Physical Stimulation",
- keywords = "Protein Conformation",
- keywords = "Protein Denaturation",
- keywords = "Protein Folding",
- keywords = "Protein Kinases",
- keywords = "Stress, Mechanical",
+ keywords = "Computer Simulation; Crystallography; Energy Transfer; Kinetics; Lasers; Micromanipulation; Microscopy, Atomic Force; Models, Molecular; Molecular Conformation; Motion; Muscle Proteins; Nanotechnology; Physical Stimulation; Protein Conformation; Protein Denaturation; Protein Folding; Protein Kinases; Stress, Mechanical",
abstract = "Mechanical forces exerted by laser tweezers or atomic
force microscopes can be used to drive rare transitions
in single molecules, such as unfolding of a protein or
volume = "6",
number = "1",
pages = "46--51",
- keywords = "Animals",
- keywords = "Contractile Proteins",
- keywords = "Dictyostelium",
- keywords = "Immunoglobulins",
- keywords = "Kinetics",
- keywords = "Microfilament Proteins",
- keywords = "Models, Molecular",
- keywords = "Protein Folding",
- keywords = "Protein Structure, Tertiary",
+ keywords = "Animals; Contractile Proteins; Dictyostelium; Immunoglobulins; Kinetics; Microfilament Proteins; Models, Molecular; Protein Folding; Protein Structure, Tertiary",
abstract = "The F-actin crosslinker filamin from Dictyostelium
discoideum (ddFLN) has a rod domain consisting of six
structurally similar immunoglobulin domains. When
volume = "76",
number = "5",
pages = "2439--2447",
- keywords = "Animals",
- keywords = "Biophysics",
- keywords = "Biopolymers",
- keywords = "Microscopy, Atomic Force",
- keywords = "Models, Chemical",
- keywords = "Muscle Proteins",
- keywords = "Protein Folding",
- keywords = "Protein Kinases",
- keywords = "Stochastic Processes",
- keywords = "Stress, Mechanical",
- keywords = "Thermodynamics",
+ keywords = "Animals; Biophysics; Biopolymers; Microscopy, Atomic Force; Models, Chemical; Muscle Proteins; Protein Folding; Protein Kinases; Stochastic Processes; Stress, Mechanical; Thermodynamics",
abstract = "Bond dissociation under steadily rising force occurs
most frequently at a time governed by the rate of
loading (Evans and Ritchie, 1997 Biophys. J.
volume = "72",
number = "4",
pages = "1541--1555",
- keywords = "Avidin",
- keywords = "Biotin",
- keywords = "Chemistry, Physical",
- keywords = "Computer Simulation",
- keywords = "Mathematics",
- keywords = "Monte Carlo Method",
- keywords = "Protein Binding",
+ keywords = "Avidin; Biotin; Chemistry, Physical; Computer Simulation; Mathematics; Monte Carlo Method; Protein Binding",
abstract = "In biology, molecular linkages at, within, and beneath
cell interfaces arise mainly from weak noncovalent
interactions. These bonds will fail under any level of
volume = "1",
number = "6",
pages = "441--450",
- keywords = "Animals",
- keywords = "Cytochrome c Group",
- keywords = "Humans",
- keywords = "Infant",
- keywords = "Protein Folding",
+ keywords = "Animals; Cytochrome c Group; Humans; Infant; Protein Folding",
abstract = "BACKGROUND: Energy landscape theory predicts that the
folding funnel for a small fast-folding alpha-helical
protein will have a transition state half-way to the
volume = "11",
number = "1",
pages = "81--85",
- keywords = "Actins",
- keywords = "Animals",
- keywords = "Contractile Proteins",
- keywords = "Cross-Linking Reagents",
- keywords = "Dictyostelium",
- keywords = "Dimerization",
- keywords = "Microfilament Proteins",
- keywords = "Microscopy, Atomic Force",
- keywords = "Mutagenesis, Site-Directed",
- keywords = "Protein Denaturation",
- keywords = "Protein Folding",
- keywords = "Protein Structure, Tertiary",
- keywords = "Protozoan Proteins",
+ keywords = "Actins; Animals; Contractile Proteins; Cross-Linking Reagents; Dictyostelium; Dimerization; Microfilament Proteins; Microscopy, Atomic Force; Mutagenesis, Site-Directed; Protein Denaturation; Protein Folding; Protein Structure, Tertiary; Protozoan Proteins",
abstract = "Many F-actin crosslinking proteins consist of two
actin-binding domains separated by a rod domain that
can vary considerably in length and structure. In this
volume = "200",
number = "4342",
pages = "618--627",
- keywords = "Antigen-Antibody Reactions",
- keywords = "Cell Adhesion",
- keywords = "Cell Membrane",
- keywords = "Chemistry, Physical",
- keywords = "Electrophysiology",
- keywords = "Enzymes",
- keywords = "Glycoproteins",
- keywords = "Kinetics",
- keywords = "Ligands",
- keywords = "Membrane Proteins",
- keywords = "Models, Biological",
- keywords = "Receptors, Drug",
+ keywords = "Antigen-Antibody Reactions; Cell Adhesion; Cell Membrane; Chemistry, Physical; Electrophysiology; Enzymes; Glycoproteins; Kinetics; Ligands; Membrane Proteins; Models, Biological; Receptors, Drug",
abstract = "A theoretical framework is proposed for the analysis
of adhesion between cells or of cells to surfaces when
the adhesion is mediated by reversible bonds between
volume = "101",
number = "39",
pages = "14102--14107",
- keywords = "Animals",
- keywords = "Ankyrin Repeat",
- keywords = "Circular Dichroism",
- keywords = "Drosophila Proteins",
- keywords = "Drosophila melanogaster",
- keywords = "Gene Deletion",
- keywords = "Models, Chemical",
- keywords = "Models, Molecular",
- keywords = "Protein Denaturation",
- keywords = "Protein Folding",
- keywords = "Protein Structure, Tertiary",
- keywords = "Spectrometry, Fluorescence",
- keywords = "Thermodynamics",
- keywords = "Urea",
+ keywords = "Animals; Ankyrin Repeat; Circular Dichroism; Drosophila Proteins; Drosophila melanogaster; Gene Deletion; Models, Chemical; Models, Molecular; Protein Denaturation; Protein Folding; Protein Structure, Tertiary; Spectrometry, Fluorescence; Thermodynamics; Urea",
abstract = "Energy landscapes have been used to conceptually
describe and model protein folding but have been
difficult to measure experimentally, in large part
volume = "21",
number = "3",
pages = "167--195",
- keywords = "Amino Acid Sequence",
- keywords = "Chemistry, Physical",
- keywords = "Computer Simulation",
- keywords = "Data Interpretation, Statistical",
- keywords = "Kinetics",
- keywords = "Models, Chemical",
- keywords = "Molecular Sequence Data",
- keywords = "Protein Biosynthesis",
- keywords = "Protein Conformation",
- keywords = "Protein Folding",
- keywords = "Proteins",
- keywords = "Thermodynamics",
+ keywords = "Amino Acid Sequence; Chemistry, Physical; Computer Simulation; Data Interpretation, Statistical; Kinetics; Models, Chemical; Molecular Sequence Data; Protein Biosynthesis; Protein Conformation; Protein Folding; Proteins; Thermodynamics",
abstract = "The understanding, and even the description of protein
folding is impeded by the complexity of the process.
Much of this complexity can be described and understood
volume = "84",
number = "21",
pages = "7524--7528",
- keywords = "Kinetics",
- keywords = "Mathematics",
- keywords = "Models, Theoretical",
- keywords = "Protein Conformation",
- keywords = "Proteins",
- keywords = "Stochastic Processes",
+ keywords = "Kinetics; Mathematics; Models, Theoretical; Protein Conformation; Proteins; Stochastic Processes",
abstract = "The theory of spin glasses was used to study a simple
model of protein folding. The phase diagram of the
model was calculated, and the results of dynamics
volume = "265",
number = "5178",
pages = "1599--1600",
- keywords = "Bacteriophage lambda",
- keywords = "DNA, Viral",
- keywords = "Least-Squares Analysis",
- keywords = "Thermodynamics",
+ keywords = "Bacteriophage lambda; DNA, Viral; Least-Squares Analysis; Thermodynamics",
ISSN = "0036-8075",
note = "WLC interpolation formula.",
}
-% see the list of BibTeX databases Beebe has compiled
-% http://www.math.utah.edu/~beebe/bibliographies.html
-
-% Beebe: http://www.math.utah.edu/pub/tex/bib/gnu.html
-@String{pub-NETWORK-THEORY = "Network Theory Ltd."}
-@String{pub-NETWORK-THEORY:adr = "Bristol, UK"}
@Book{galassi05,
author = "Mark Galassi and Jim Davies and James Theiler and
Brian Gough and Gerard Jungman and Michael Booth and
ISBN-13 = "978-0-9541617-3-6",
LCCN = "QA76.73.C15",
bibdate = "Wed Oct 30 10:44:22 2002",
- acknowledgement = ack-nhfb,
- remark = "This is the revised and updated second edition of the
+ note = "This is the revised and updated second edition of the
manual, and corresponds to version 1.6 of the
library.",
URL = "http://www.network-theory.co.uk/gsl/manual/",
}
@Misc{sw:check,
+ key = "sw:check",
title = {Check},
author = {Arien Malec and Chris Pickett and Fredrik Hugosson and Robert Lemmen},
version = {version 0.9.4},
}
@Misc{sw:noweb,
+ key="sw:noweb",
title = {Noweb},
author = {Norman Ramsey},
version = {version 2.11b},
}
@Misc{sw:python,
+ key="sw:python",
title = {Python},
- author = {Guido {van Rossum} and others},
+ author = {van Rossum, Guido and others},
version = {version 2.5.1},
year = "2007",
month = apr,
}
@Misc{sw:scipy,
+ key="sw:scipy",
author = {Eric Jones and Travis Oliphant and Pearu Peterson and others},
title = {{SciPy}: Open source scientific tools for {Python}},
year = {2001--},
}
@article{gompertz25,
- jstor_articletype = {primary_article},
title = {On the Nature of the Function Expressive of the Law of Human Mortality, and on a New Mode of Determining the Value of Life Contingencies},
author = {Gompertz, Benjamin},
journal = {Philosophical Transactions of the Royal Society of London},
- jstor_issuetitle = {},
volume = {115},
number = {},
- jstor_formatteddate = {1825},
pages = {513--583},
url = {http://www.jstor.org/stable/107756},
ISSN = {02610523},
abstract = {},
publisher = {The Royal Society},
- language = {},
- copyright = {Copyright © 1825 The Royal Society},
+ copyright = {Copyright \copy 1825 The Royal Society},
year = {1825},
}
volume = "92",
number = "12",
pages = "4188--4195",
- keywords = "Computer Simulation",
- keywords = "DNA",
- keywords = "Elasticity",
- keywords = "Mechanics",
- keywords = "Micromanipulation",
- keywords = "Microscopy, Atomic Force",
- keywords = "Models, Chemical",
- keywords = "Models, Molecular",
- keywords = "Nanostructures",
- keywords = "Nucleic Acid Conformation",
- keywords = "Porosity",
- keywords = "Stress, Mechanical",
+ keywords = "Computer Simulation; DNA; Elasticity; Mechanics; Micromanipulation; Microscopy, Atomic Force; Models, Chemical; Models, Molecular; Nanostructures; Nucleic Acid Conformation; Porosity; Stress, Mechanical",
abstract = "Single-molecule force experiments provide powerful new
tools to explore biomolecular interactions. Here, we
describe a systematic procedure for extracting kinetic
volume = "96",
number = "10",
pages = "108101",
- keywords = "Biophysics",
- keywords = "Computer Simulation",
- keywords = "Data Interpretation, Statistical",
- keywords = "Kinetics",
- keywords = "Micromanipulation",
- keywords = "Models, Chemical",
- keywords = "Models, Molecular",
- keywords = "Molecular Conformation",
- keywords = "Muscle Proteins",
- keywords = "Nucleic Acid Conformation",
- keywords = "Protein Binding",
- keywords = "Protein Denaturation",
- keywords = "Protein Folding",
- keywords = "Protein Kinases",
- keywords = "RNA",
- keywords = "Stress, Mechanical",
- keywords = "Thermodynamics",
- keywords = "Time Factors",
+ keywords = "Biophysics; Computer Simulation; Data Interpretation, Statistical; Kinetics; Micromanipulation; Models, Chemical; Models, Molecular; Molecular Conformation; Muscle Proteins; Nucleic Acid Conformation; Protein Binding; Protein Denaturation; Protein Folding; Protein Kinases; RNA; Stress, Mechanical; Thermodynamics; Time Factors",
abstract = "We present a unified framework for extracting kinetic
information from single-molecule pulling experiments at
constant force or constant pulling speed. Our procedure
volume = "213",
number = "4",
pages = "527--545",
- keywords = "Adult",
- keywords = "Aged",
- keywords = "Aging",
- keywords = "Animals",
- keywords = "Humans",
- keywords = "Longevity",
- keywords = "Middle Aged",
- keywords = "Models, Biological",
- keywords = "Survival Rate",
- keywords = "Systems Theory",
+ keywords = "Adult; Aged; Aging; Animals; Humans; Longevity; Middle Aged; Models, Biological; Survival Rate; Systems Theory",
abstract = "Reliability theory is a general theory about systems
failure. It allows researchers to predict the
age-related failure kinetics for a system of given
volume = "34",
number = "1",
pages = "1--15",
- keywords = "Aging",
- keywords = "Biometry",
- keywords = "History, 19th Century",
- keywords = "History, 20th Century",
- keywords = "Humans",
- keywords = "Life Tables",
- keywords = "Mortality",
- keywords = "Sexual Maturation",
+ keywords = "Aging; Biometry; History, 19th Century; History, 20th Century; Humans; Life Tables; Mortality; Sexual Maturation",
abstract = "In 1825 British actuary Benjamin Gompertz made a
simple but important observation that a law of
geometrical progression pervades large portions of
of his observations and insights in light of research
on aging that has taken place since then.",
ISSN = "0070-3370",
-notes = "Hardly any actual math, but the references might be interesting.
+note = "Hardly any actual math, but the references might be interesting.
I'll look into them if I have the time.
Available through several repositories.",
url = "http://www.jstor.org/stable/2061656",
volume = "69",
number = "1-2",
pages = "1--31",
- keywords = "Adolescent",
- keywords = "Adult",
- keywords = "Aged",
- keywords = "Aged, 80 and over",
- keywords = "Aging",
- keywords = "Biometry",
- keywords = "Child",
- keywords = "Child, Preschool",
- keywords = "Data Interpretation, Statistical",
- keywords = "Female",
- keywords = "Humans",
- keywords = "Infant",
- keywords = "Infant, Newborn",
- keywords = "Longitudinal Studies",
- keywords = "Male",
- keywords = "Middle Aged",
- keywords = "Models, Biological",
- keywords = "Models, Statistical",
- keywords = "Mortality",
+ keywords = "Adolescent; Adult; Aged; Aged, 80 and over; Aging; Biometry; Child; Child, Preschool; Data Interpretation, Statistical; Female; Humans; Infant; Infant, Newborn; Longitudinal Studies; Male; Middle Aged; Models, Biological; Models, Statistical; Mortality",
abstract = "The Gompertz and Weibull functions are compared with
respect to goodness-of-fit to human mortality
distributions; ability to describe mortality curve
and the probable errors in those analyses are
discussed.",
ISSN = "0047-6374",
-notes = "Nice table of various functions associated with Gompertz and Weibull models.",
+note = "Nice table of various functions associated with Gompertz and Weibull models.",
doi = "10.1016/0047-6374(93)90068-3"
}
volume = "3",
number = "3",
pages = "255--261",
- keywords = "Ligands",
- keywords = "Microscopy, Atomic Force",
- keywords = "Polysaccharides",
- keywords = "Protein Denaturation",
- keywords = "Proteins",
+ keywords = "Ligands; Microscopy, Atomic Force; Polysaccharides; Protein Denaturation; Proteins",
abstract = "Many processes in the body are effected and regulated
by highly specialized protein molecules: These
molecules certainly deserve the name ``biochemical
volume = "112",
number = "1-2",
pages = "13--23",
- keywords = "Binding Sites",
- keywords = "Computer Simulation",
- keywords = "DNA",
- keywords = "DNA-Binding Proteins",
- keywords = "Elasticity",
- keywords = "Ligands",
- keywords = "Macromolecular Substances",
- keywords = "Micromanipulation",
- keywords = "Microscopy, Atomic Force",
- keywords = "Models, Chemical",
- keywords = "Molecular Biology",
- keywords = "Nucleic Acid Conformation",
- keywords = "Physical Stimulation",
- keywords = "Protein Binding",
- keywords = "Protein Conformation",
- keywords = "Stress, Mechanical",
+ keywords = "Binding Sites; Computer Simulation; DNA; DNA-Binding Proteins; Elasticity; Ligands; Macromolecular Substances; Micromanipulation; Microscopy, Atomic Force; Models, Chemical; Molecular Biology; Nucleic Acid Conformation; Physical Stimulation; Protein Binding; Protein Conformation; Stress, Mechanical",
abstract = "The forced rupture of single chemical bonds in
biomolecular compounds (e.g. ligand-receptor systems)
as observed in dynamic force spectroscopy experiments
volume = "90",
number = "11",
pages = "3851--3864",
- keywords = "Biomechanics",
- keywords = "Microscopy, Atomic Force",
- keywords = "Models, Molecular",
- keywords = "Statistical Distributions",
- keywords = "Thermodynamics",
+ keywords = "Biomechanics; Microscopy, Atomic Force; Models, Molecular; Statistical Distributions; Thermodynamics",
abstract = "We show that the standard theoretical framework in
single-molecule force spectroscopy has to be extended
to consistently describe the experimental findings. The
volume = "100",
number = "20",
pages = "11378--11381",
- keywords = "Spectrum Analysis",
- keywords = "Temperature",
+ keywords = "Spectrum Analysis; Temperature",
abstract = "Dynamic force spectroscopy of single molecules is
described by a model that predicts a distribution of
rupture forces, the corresponding mean rupture force,
volume = "73",
number = "3",
pages = "1281--1287",
- keywords = "Binding Sites",
- keywords = "Biopolymers",
- keywords = "Kinetics",
- keywords = "Ligands",
- keywords = "Microscopy, Atomic Force",
- keywords = "Models, Chemical",
- keywords = "Molecular Conformation",
- keywords = "Protein Conformation",
- keywords = "Proteins",
- keywords = "Reproducibility of Results",
- keywords = "Stochastic Processes",
- keywords = "Thermodynamics",
+ keywords = "Binding Sites; Biopolymers; Kinetics; Ligands; Microscopy, Atomic Force; Models, Chemical; Molecular Conformation; Protein Conformation; Proteins; Reproducibility of Results; Stochastic Processes; Thermodynamics",
abstract = "One-dimensional stochastic models demonstrate that
molecular dynamics simulations of a few nanoseconds can
be used to reconstruct the essential features of the
volume = "72",
number = "4",
pages = "1568--1581",
- keywords = "Avidin",
- keywords = "Binding Sites",
- keywords = "Biotin",
- keywords = "Computer Simulation",
- keywords = "Hydrogen Bonding",
- keywords = "Mathematics",
- keywords = "Microscopy, Atomic Force",
- keywords = "Microspheres",
- keywords = "Models, Molecular",
- keywords = "Molecular Structure",
- keywords = "Protein Binding",
- keywords = "Protein Conformation",
- keywords = "Protein Folding",
- keywords = "Sepharose",
+ keywords = "Avidin; Binding Sites; Biotin; Computer Simulation; Hydrogen Bonding; Mathematics; Microscopy, Atomic Force; Microspheres; Models, Molecular; Molecular Structure; Protein Binding; Protein Conformation; Protein Folding; Sepharose",
abstract = "We report molecular dynamics simulations that induce,
over periods of 40-500 ps, the unbinding of biotin from
avidin by means of external harmonic forces with force
@Book{vanKampen07,
title = "Stochastic Processes in Physics and Chemistry",
- author = "N.G. {van Kampen}",
- editin = "3",
+ author = "van Kampen, N.G.",
+ edition = "3",
publisher = "Elsevier, North-Holland Personal Library",
address = "Amsterdam",
year = "2007",
}
@Article{walton08,
- author = "Emily B. Walton and Sunyoung Lee and Krystyn J. {Van
- Vliet}",
+ author = "Emily B. Walton and Sunyoung Lee and van Vliet, Krystyn J.",
title = "Extending Bell's model: how force transducer stiffness
alters measured unbinding forces and kinetics of
molecular complexes.",
volume = "94",
number = "7",
pages = "2621--2630",
- keywords = "Biotin",
- keywords = "Computer Simulation",
- keywords = "Elasticity",
- keywords = "Kinetics",
- keywords = "Mechanotransduction, Cellular",
- keywords = "Models, Chemical",
- keywords = "Models, Molecular",
- keywords = "Molecular Motor Proteins",
- keywords = "Motion",
- keywords = "Streptavidin",
- keywords = "Stress, Mechanical",
- keywords = "Transducers",
+ keywords = "Biotin; Computer Simulation; Elasticity; Kinetics; Mechanotransduction, Cellular; Models, Chemical; Models, Molecular; Molecular Motor Proteins; Motion; Streptavidin; Stress, Mechanical; Transducers",
abstract = "Forced unbinding of complementary macromolecules such
as ligand-receptor complexes can reveal energetic and
kinetic details governing physiological processes
}
@Article{wikipedia_cubic_function,
+ key="wikipedia_cubic_function",
author = "Wikipedia",
title = "Cubic function",
journal = "Wikipedia",
projects / sawsim.git / commitdiff