hooke.git
8 years agoStandardize playlist path expansion in hooke/playlist.py.
W. Trevor King [Wed, 9 Nov 2011 19:55:10 +0000 (14:55 -0500)]
Standardize playlist path expansion in hooke/playlist.py.

8 years agoAdd motivational blurb to command_stack docstring.
W. Trevor King [Tue, 11 Oct 2011 17:51:45 +0000 (13:51 -0400)]
Add motivational blurb to command_stack docstring.

8 years agoFix citating -> citing typo in doc/analysis.txt.
W. Trevor King [Tue, 11 Oct 2011 17:43:25 +0000 (13:43 -0400)]
Fix citating -> citing typo in doc/analysis.txt.

8 years agoRemove more invalid loop syntax from hooke/plugin/multifit.py.
W. Trevor King [Sun, 15 May 2011 15:52:58 +0000 (11:52 -0400)]
Remove more invalid loop syntax from hooke/plugin/multifit.py.

8 years agoFix invalid loop syntax in hooke/plugin/multifit.py.
W. Trevor King [Sun, 15 May 2011 15:32:48 +0000 (11:32 -0400)]
Fix invalid loop syntax in hooke/plugin/multifit.py.

8 years agoAdjust fit-parameter handling for the polymer_fit plugin.
W. Trevor King [Thu, 28 Apr 2011 16:30:10 +0000 (12:30 -0400)]
Adjust fit-parameter handling for the polymer_fit plugin.

This should have happened during

changeset:   820:b0d23a0bdaf7
branch:      wtk
user:        W. Trevor King <wking@drexel.edu>
date:        Thu Apr 28 07:49:26 2011 -0400
summary:     Adapt to handle scipy.optimize.leastsq for scipy >= 0.8.0.

8 years agoClean up and adjust names of commands requiring curve updates in the GUI.
W. Trevor King [Thu, 28 Apr 2011 12:34:14 +0000 (08:34 -0400)]
Clean up and adjust names of commands requiring curve updates in the GUI.

8 years agoRan update_copyright.py.
W. Trevor King [Thu, 28 Apr 2011 11:50:59 +0000 (07:50 -0400)]
Ran update_copyright.py.

8 years agoAdapt to handle scipy.optimize.leastsq for scipy >= 0.8.0.
W. Trevor King [Thu, 28 Apr 2011 11:49:26 +0000 (07:49 -0400)]
Adapt to handle scipy.optimize.leastsq for scipy >= 0.8.0.

For single-parameter fitting, leastsq() used to return the fitted
parameter as a float.  Now it returns it as a length-one array.  With
this commit, Hooke should work with either case.

8 years agoInitial attempt at PicoForce 0x05120005 support.
W. Trevor King [Thu, 21 Apr 2011 12:12:27 +0000 (08:12 -0400)]
Initial attempt at PicoForce 0x05120005 support.

8 years agoAdd Mercurial URL to README and use README as long_description,
W. Trevor King [Tue, 19 Apr 2011 20:50:27 +0000 (16:50 -0400)]
Add Mercurial URL to README and use README as long_description,

8 years agoMerge Veeco -> Bruker and NumPy/SciPy doc guide patches.
W. Trevor King [Tue, 14 Dec 2010 21:14:55 +0000 (16:14 -0500)]
Merge Veeco -> Bruker and NumPy/SciPy doc guide patches.

8 years agoUpdate URL for NumPy/SciPy documentation guide.
W. Trevor King [Tue, 14 Dec 2010 21:13:36 +0000 (16:13 -0500)]
Update URL for NumPy/SciPy documentation guide.

9 years agoVeeco -> Bruker since sale of metrology wing this August.
W. Trevor King [Fri, 19 Nov 2010 18:08:07 +0000 (13:08 -0500)]
Veeco -> Bruker since sale of metrology wing this August.

9 years agoBetter contact point detection now handles some initial vibrations.
W. Trevor King [Sat, 13 Nov 2010 13:31:53 +0000 (08:31 -0500)]
Better contact point detection now handles some initial vibrations.

9 years agoActually, filtering the copy directly is *almost* ok.
W. Trevor King [Thu, 11 Nov 2010 13:27:15 +0000 (08:27 -0500)]
Actually, filtering the copy directly is *almost* ok.

9 years agoUse hooke.command_by_name[...] in hooke.plugin.*.
W. Trevor King [Thu, 11 Nov 2010 13:15:54 +0000 (08:15 -0500)]
Use hooke.command_by_name[...] in hooke.plugin.*.

9 years agoOnly shallow copy when filtering a playlist.
W. Trevor King [Thu, 11 Nov 2010 13:13:09 +0000 (08:13 -0500)]
Only shallow copy when filtering a playlist.

We should iterate through the base playlist, because iterating over a
playlist that's having items removed is poorly defined.  However, if
were iterating through the input playlist and removing items from the
copy, we need a shallow copy so the item ids still match.  Curves can
belong to several playlists, so shallow copies are ok.

Another problem with the old version was that the _index was being
updated in the copy, not the current curve, so the
current_curve_callback() bit was *not* working.

9 years ago.`_setup_item` -> `._setup_item` in hooke.playlist.Playlist.unload.__doc__.
W. Trevor King [Thu, 11 Nov 2010 12:11:38 +0000 (07:11 -0500)]
.`_setup_item` -> `._setup_item` in hooke.playlist.Playlist.unload.__doc__.

9 years agoAdjust playlist curve setup to load curves after YAML restore.
W. Trevor King [Wed, 10 Nov 2010 18:10:42 +0000 (13:10 -0500)]
Adjust playlist curve setup to load curves after YAML restore.

9 years agoAdd yaml load test to hooke.curve.Data.
W. Trevor King [Wed, 10 Nov 2010 17:56:07 +0000 (12:56 -0500)]
Add yaml load test to hooke.curve.Data.

9 years agoexpanduser() in hooke.playlist.load().
W. Trevor King [Wed, 10 Nov 2010 16:13:32 +0000 (11:13 -0500)]
expanduser() in hooke.playlist.load().

9 years agoDon't save digests in the playlist file.
W. Trevor King [Tue, 9 Nov 2010 21:18:06 +0000 (16:18 -0500)]
Don't save digests in the playlist file.

They create dependency loops:
  digest_{i+1} = checksum(file with digest_i)
With the old way, exiting after
  $ hk.py -c 'new_playlist --output_playlist mylist'
          -c 'glob_curves_to_playlist ...*.curve'
          -c 'save_playlist --output mylist' -p
would complain of unsaved playlists.

9 years agodata_logger.normalize_logdir -> normalize_log_dir with data_logger v0.4.
W. Trevor King [Tue, 9 Nov 2010 20:24:47 +0000 (15:24 -0500)]
data_logger.normalize_logdir -> normalize_log_dir with data_logger v0.4.

9 years agoUpdate WTK driver links with git.php -> gitweb.cgi.
W. Trevor King [Tue, 9 Nov 2010 20:22:31 +0000 (15:22 -0500)]
Update WTK driver links with git.php -> gitweb.cgi.

9 years agoUpdate test/wtk_driver.py for data_logger version 0.4.
W. Trevor King [Tue, 9 Nov 2010 20:05:03 +0000 (15:05 -0500)]
Update test/wtk_driver.py for data_logger version 0.4.

9 years agoDon't use questions in the README section headings.
W. Trevor King [Wed, 3 Nov 2010 19:18:18 +0000 (15:18 -0400)]
Don't use questions in the README section headings.

9 years agoFixup reStructuredText in README.
W. Trevor King [Wed, 3 Nov 2010 19:14:48 +0000 (15:14 -0400)]
Fixup reStructuredText in README.

9 years agoExplain my Hooke ebuild in doc/install.txt.
W. Trevor King [Wed, 3 Nov 2010 18:41:49 +0000 (14:41 -0400)]
Explain my Hooke ebuild in doc/install.txt.

9 years agoRan update_copyright.py, updating hooke/ui/gui/dialog/string.py.
W. Trevor King [Wed, 3 Nov 2010 15:37:50 +0000 (11:37 -0400)]
Ran update_copyright.py, updating hooke/ui/gui/dialog/string.py.

9 years agoFix hg.py -> hk.py in setup.py.
W. Trevor King [Wed, 3 Nov 2010 15:36:52 +0000 (11:36 -0400)]
Fix hg.py -> hk.py in setup.py.

9 years agoMerged `igorbinarywave.py --not-strict` and playlist expanduser() commits.
W. Trevor King [Thu, 28 Oct 2010 16:43:35 +0000 (12:43 -0400)]
Merged `igorbinarywave.py --not-strict` and playlist expanduser() commits.

9 years agoAdd -n/--not-strict to igorbinarywave.py (currently for IBW files with non-empty...
W. Trevor King [Thu, 28 Oct 2010 16:39:29 +0000 (12:39 -0400)]
Add -n/--not-strict to igorbinarywave.py (currently for IBW files with non-empty padding).

9 years agoMove some playlist-related expanduser() calls from hooke.plugin.* to hooke.playlist...
W. Trevor King [Wed, 29 Sep 2010 16:41:23 +0000 (12:41 -0400)]
Move some playlist-related expanduser() calls from hooke.plugin.* to hooke.playlist and hooke.curve.

9 years agoUpdate hooke.playlist.FilePlaylist doctests for explicit_user_call.
W. Trevor King [Wed, 29 Sep 2010 14:27:48 +0000 (10:27 -0400)]
Update hooke.playlist.FilePlaylist doctests for explicit_user_call.

9 years agoUpdate hooke.command_stack.CommandStack doctests for explicit_user_call.
W. Trevor King [Wed, 29 Sep 2010 14:25:40 +0000 (10:25 -0400)]
Update hooke.command_stack.CommandStack doctests for explicit_user_call.

9 years agoCleanups so hooke/ui/gui/ passes unittests.
W. Trevor King [Wed, 29 Sep 2010 14:17:07 +0000 (10:17 -0400)]
Cleanups so hooke/ui/gui/ passes unittests.

9 years agoLog errors when instantiation fails in hooke.util.pluggable.construct_*().
W. Trevor King [Wed, 29 Sep 2010 14:08:00 +0000 (10:08 -0400)]
Log errors when instantiation fails in hooke.util.pluggable.construct_*().

9 years agoRelax doctest constraints on hooke.util.fit.ModelFitter.
W. Trevor King [Wed, 29 Sep 2010 13:53:30 +0000 (09:53 -0400)]
Relax doctest constraints on hooke.util.fit.ModelFitter.

I'm not sure of the reason behind the differences, but sometimes the
exit condition varies slightly depending on which test box I use.

9 years agoAdd os.path.expanduser() wrappers to user-supplied paths.
W. Trevor King [Wed, 29 Sep 2010 13:47:50 +0000 (09:47 -0400)]
Add os.path.expanduser() wrappers to user-supplied paths.

This allows things like
  [gui user interface]
  perspective path = ~/.hooke/resources/gui/perspective
to work as expected.

9 years agoZip files use slashes (not os.path.sep) for their path separator (JPK driver).
W. Trevor King [Wed, 29 Sep 2010 12:59:25 +0000 (08:59 -0400)]
Zip files use slashes (not os.path.sep) for their path separator (JPK driver).

9 years agoQuote backslash-containing arguments in doc/tutorial.py.
W. Trevor King [Wed, 29 Sep 2010 11:42:59 +0000 (07:42 -0400)]
Quote backslash-containing arguments in doc/tutorial.py.

9 years agoalbedomanu -> Manuel Gensler based on an email from the latter.
W. Trevor King [Wed, 15 Sep 2010 19:22:38 +0000 (15:22 -0400)]
albedomanu -> Manuel Gensler based on an email from the latter.

9 years agoUse `with Closing(...) as f:` in JPKDriver._zip_segment().
W. Trevor King [Thu, 9 Sep 2010 12:26:49 +0000 (08:26 -0400)]
Use `with Closing(...) as f:` in JPKDriver._zip_segment().

9 years agoExtended test/jpk_driver.py to test .jpk-data1D file reading.
W. Trevor King [Thu, 9 Sep 2010 12:24:58 +0000 (08:24 -0400)]
Extended test/jpk_driver.py to test .jpk-data1D file reading.

9 years agoExtent JPK driver to also read .jpk-data1D-file files.
W. Trevor King [Thu, 9 Sep 2010 11:37:03 +0000 (07:37 -0400)]
Extent JPK driver to also read .jpk-data1D-file files.

Also:
* Lowercase most JPK exception messages.
* Decode integer types to floats as specified by 'encoder'.
* Give the path to the old file when suggeesting an `out2jpk-force` upgrade.

9 years agoFix test/jpk_driver.py now that we can load each of the examples.
W. Trevor King [Wed, 8 Sep 2010 20:22:09 +0000 (16:22 -0400)]
Fix test/jpk_driver.py now that we can load each of the examples.

9 years agoEnsure unique segment names in the JPK driver.
W. Trevor King [Wed, 8 Sep 2010 20:21:39 +0000 (16:21 -0400)]
Ensure unique segment names in the JPK driver.

9 years agoFix distance_base_unit extraction in JPK driver for encoded data.
W. Trevor King [Wed, 8 Sep 2010 20:13:18 +0000 (16:13 -0400)]
Fix distance_base_unit extraction in JPK driver for encoded data.

9 years agoFix JPK list field splitting for empty lists.
W. Trevor King [Wed, 8 Sep 2010 20:09:23 +0000 (16:09 -0400)]
Fix JPK list field splitting for empty lists.

9 years agoOnly pass curve params out to segments if they exist.
W. Trevor King [Wed, 8 Sep 2010 20:02:24 +0000 (16:02 -0400)]
Only pass curve params out to segments if they exist.

9 years agoSkip some param translation in the JPK driver for channel-less segments.
W. Trevor King [Wed, 8 Sep 2010 19:48:22 +0000 (15:48 -0400)]
Skip some param translation in the JPK driver for channel-less segments.

9 years agoImprove handling of the base calibration slot units in JPK driver.
W. Trevor King [Wed, 8 Sep 2010 19:45:20 +0000 (15:45 -0400)]
Improve handling of the base calibration slot units in JPK driver.

9 years agoI'm using the 0.12 specs for the JPK driver, so allow version 0.12 files.
W. Trevor King [Wed, 8 Sep 2010 17:59:08 +0000 (13:59 -0400)]
I'm using the 0.12 specs for the JPK driver, so allow version 0.12 files.

The previous range(12) code only went up to version 0.11.

9 years agoAdjust unit extraction from the JPK file format.
W. Trevor King [Wed, 8 Sep 2010 17:57:56 +0000 (13:57 -0400)]
Adjust unit extraction from the JPK file format.

I've emailed Michael Haggerty to track down the version that made the
change from 'data.unit=' to 'data.unit.unit='.  For now, I'm assuming
it's just <= 0.2.

9 years agoAdd support for raster and constant data to JPK driver.
W. Trevor King [Wed, 8 Sep 2010 17:35:23 +0000 (13:35 -0400)]
Add support for raster and constant data to JPK driver.

9 years agoAdd support for {,u}int{16,32} segments in JPK driver.
W. Trevor King [Wed, 8 Sep 2010 17:18:19 +0000 (13:18 -0400)]
Add support for {,u}int{16,32} segments in JPK driver.

TODO: check that these are converted to float32 or similar when
converting from bits to meters.  Potentially change from multi-column
Data blocks to lists of single column blocks to allow for different
dtypes in each block.

9 years agoBreak JPK data block name extraction out into ._zip_segment_name().
W. Trevor King [Wed, 8 Sep 2010 14:58:45 +0000 (10:58 -0400)]
Break JPK data block name extraction out into ._zip_segment_name().

Also removes restrictions on allowed names.

9 years agoExtract 'z piezo sensitivity (m/V)' from JPK files into Curve.info.
W. Trevor King [Wed, 8 Sep 2010 14:54:40 +0000 (10:54 -0400)]
Extract 'z piezo sensitivity (m/V)' from JPK files into Curve.info.

Not particularly important, since we convert from V to m inside the
driver, but it's an interesting property for getting a feel for how a
particular instrument works.

9 years agoAccept version 0.2 (and similar?) JPK files with channels (vs. channels.list).
W. Trevor King [Wed, 8 Sep 2010 14:51:08 +0000 (10:51 -0400)]
Accept version 0.2 (and similar?) JPK files with channels (vs. channels.list).

I've emailed Michael Haggerty for clarification on this issue, but
this will work until I hear back.

9 years agoMark block level spring constant as a hack in the JPK driver.
W. Trevor King [Wed, 8 Sep 2010 14:41:03 +0000 (10:41 -0400)]
Mark block level spring constant as a hack in the JPK driver.

9 years agoDon't assume you know which sJPK egments will be created.
W. Trevor King [Wed, 8 Sep 2010 14:39:57 +0000 (10:39 -0400)]
Don't assume you know which sJPK egments will be created.

9 years agoAllow JPK file versions up to 0.12 (unfinished).
W. Trevor King [Wed, 8 Sep 2010 14:38:10 +0000 (10:38 -0400)]
Allow JPK file versions up to 0.12 (unfinished).

9 years agoAdd version 0.2 and 0.12 JPK file examples from Michael Haggerty.
W. Trevor King [Wed, 8 Sep 2010 14:33:56 +0000 (10:33 -0400)]
Add version 0.2 and 0.12 JPK file examples from Michael Haggerty.

Also adjust test/jpk_driver.py to attempt to load each file in the JPK
playlist.  Note that this currently fails for some of the new files
because I haven't fixed the JPK driver yet.

9 years agoMove hooke.driver.igorbinarywave to hooke.util.igorbinarywave.
W. Trevor King [Wed, 8 Sep 2010 14:30:28 +0000 (10:30 -0400)]
Move hooke.driver.igorbinarywave to hooke.util.igorbinarywave.

It's a utility for the MFP3D driver, not a driver in its own right.

9 years agoUpdate test/ to pass after 8f1ebe298b48.
W. Trevor King [Tue, 7 Sep 2010 19:07:02 +0000 (15:07 -0400)]
Update test/ to pass after 8f1ebe298b48.

9 years agoDon't specify curve or data block types. See doc/standards.txt.
W. Trevor King [Tue, 7 Sep 2010 18:43:11 +0000 (14:43 -0400)]
Don't specify curve or data block types.  See doc/standards.txt.

9 years agoAdd information about JPKForceSpec.txt to hooke.driver.jpk.__doc__.
W. Trevor King [Mon, 6 Sep 2010 00:26:03 +0000 (20:26 -0400)]
Add information about JPKForceSpec.txt to hooke.driver.jpk.__doc__.

Update this if you adjust the driver based on a newer spec, or if JPK
changes their licensing or contact email address.

9 years agoImprove error message for old (ASCII) JPK file formats.
W. Trevor King [Mon, 6 Sep 2010 00:02:09 +0000 (20:02 -0400)]
Improve error message for old (ASCII) JPK file formats.

Michael Haggerty gave me the name of JPK's upgrade script so we can
point users in the right direction.

9 years agoRemove 'results' panel from GUI. Use 'block info' instead.
W. Trevor King [Thu, 2 Sep 2010 19:26:38 +0000 (15:26 -0400)]
Remove 'results' panel from GUI.  Use 'block info' instead.

9 years agoAdded --config option to bin/hk.py to override built in config file path.
W. Trevor King [Thu, 2 Sep 2010 19:23:07 +0000 (15:23 -0400)]
Added --config option to bin/hk.py to override built in config file path.

9 years agoRemove hooke/plugin/export.py.
W. Trevor King [Thu, 2 Sep 2010 14:19:35 +0000 (10:19 -0400)]
Remove hooke/plugin/export.py.

You can achieve the similar effects with
  do_fits         ->  'block info'
  do_force_curve  ->  'export block'
  do_notes        ->  'save playlist'
  do_overlay      ->  'export block' or future 'superimpose' + 'export block'
  do_results      ->  'block info' or 'export block'

9 years agoRemove hooke/plugin/results.py.
W. Trevor King [Thu, 2 Sep 2010 14:12:59 +0000 (10:12 -0400)]
Remove hooke/plugin/results.py.

I'm not sure what it was for in the first place.  Probably not a great
reason to remove it ;), but if it turns out to have been important, we
can always bring it back later.

9 years agoRemove hooke/plugin/procplots.py.
W. Trevor King [Thu, 2 Sep 2010 14:10:18 +0000 (10:10 -0400)]
Remove hooke/plugin/procplots.py.

Nothing substantially different from hooke/plugin/plotmanip.py.

9 years agoRemove hooke/plugin/generalvclamp.py.
W. Trevor King [Thu, 2 Sep 2010 14:06:54 +0000 (10:06 -0400)]
Remove hooke/plugin/generalvclamp.py.

The only functions without analogs in the current framework are
already listed at the OldCruft class at the end of
hooke/plugin/curve.py.

9 years agoRemove hooke/plugin/flatfilts*
W. Trevor King [Thu, 2 Sep 2010 13:58:14 +0000 (09:58 -0400)]
Remove hooke/plugin/flatfilts*

Their functionality is now distributed among
  hooke/plugin/flatfilt.py
  hooke/plugin/convfilt.py
  hooke/util/peak.py

9 years agoUpdate test/ with new 'block names' in 'curve info' (from 3371b5652dfe).
W. Trevor King [Thu, 2 Sep 2010 10:37:55 +0000 (06:37 -0400)]
Update test/ with new 'block names' in 'curve info' (from 3371b5652dfe).

9 years agoAdd 'block names' argument to 'curve info'.
W. Trevor King [Thu, 2 Sep 2010 10:26:00 +0000 (06:26 -0400)]
Add 'block names' argument to 'curve info'.

Many commands key off the block name, so there should be a way for the
user to determine what the block names are.

9 years agoAdd list of possible keys to 'block info' error for key discovery.
W. Trevor King [Thu, 2 Sep 2010 10:23:05 +0000 (06:23 -0400)]
Add list of possible keys to 'block info' error for key discovery.

9 years agoUpdated test/ to match new pformated command line output.
W. Trevor King [Thu, 2 Sep 2010 02:37:17 +0000 (22:37 -0400)]
Updated test/ to match new pformated command line output.

9 years agopprint.pformat output dicts in ui.commandline.
W. Trevor King [Thu, 2 Sep 2010 02:22:03 +0000 (22:22 -0400)]
pprint.pformat output dicts in ui.commandline.

Also more str() -> unicode() (see 2f57e930cd52).

9 years agoAdded 'block info' to retrieve and export portions of Curve.data[*].info.
W. Trevor King [Thu, 2 Sep 2010 02:06:59 +0000 (22:06 -0400)]
Added 'block info' to retrieve and export portions of Curve.data[*].info.

9 years agoNote that unloaded curves will not have any Data or DataInfo portion saved in playlis...
W. Trevor King [Wed, 1 Sep 2010 22:28:13 +0000 (18:28 -0400)]
Note that unloaded curves will not have any Data or DataInfo portion saved in playlist files.

9 years agoRan update_copyright.py.
W. Trevor King [Wed, 1 Sep 2010 20:31:08 +0000 (16:31 -0400)]
Ran update_copyright.py.

9 years agoAdd 'hg update wtk' to Mercurial installation directions.
W. Trevor King [Wed, 1 Sep 2010 14:01:35 +0000 (10:01 -0400)]
Add 'hg update wtk' to Mercurial installation directions.

9 years agoCheck data copying in Curve.__copy__ and .__deepcopy__ doctests.
W. Trevor King [Tue, 31 Aug 2010 12:44:49 +0000 (08:44 -0400)]
Check data copying in Curve.__copy__ and .__deepcopy__ doctests.

9 years agoStore a copy of params in CurveCommand._add_to_command_stack.
W. Trevor King [Mon, 30 Aug 2010 17:56:49 +0000 (13:56 -0400)]
Store a copy of params in CurveCommand._add_to_command_stack.

We may modify the parameter dict later during the command's execution,
and we want future runs via the command stack to replicate the first
run from the raw initial parameters.  If you don't do this, you'll get
errors like

    $ ./bin/hk.py
        -c 'load_playlist test/data/vclamp_picoforce/playlist'
        -c 'start_command_capture'
        -c 'zero_surface_contact_point --block approach'
        -c 'zero_surface_contact_point --block retract'
        -c 'stop_command_capture'
        -c 'apply_command_stack_to_playlist --enable-evaluate'
        -c 'flat_filter_playlist --block retract --min_points 1'
    Success
    ...
    Failure
    Expected a list of Peaks, not <class 'hooke.command.Failure'>:
      surface distance (m) not in retract (['z piezo (m)', 'deflection (m)',
      'surface distance (m) (m)', 'surface deflection (m) (m)']):...

where the units '(m)' were appended twice, once during the initial
command run, and again during the reload's command stack exectution.

9 years agoMaintain Curve._hooke setting during copy and deepcopy.
W. Trevor King [Mon, 30 Aug 2010 17:22:27 +0000 (13:22 -0400)]
Maintain Curve._hooke setting during copy and deepcopy.

9 years agoFlesh out command line help messages.
W. Trevor King [Sun, 29 Aug 2010 00:47:43 +0000 (20:47 -0400)]
Flesh out command line help messages.

9 years ago.__setup_params() -> ._setup_params() in hooke/plugin/*.py.
W. Trevor King [Sat, 28 Aug 2010 23:35:49 +0000 (19:35 -0400)]
.__setup_params() -> ._setup_params() in hooke/plugin/*.py.

Methods starting with '__' get special name mangling.
  http://docs.python.org/reference/expressions.html#atom-identifiers
We don't want any of that.

9 years agoDon't distinguish between ASCII unicode and strings in YAML output.
W. Trevor King [Sat, 28 Aug 2010 22:58:38 +0000 (18:58 -0400)]
Don't distinguish between ASCII unicode and strings in YAML output.

9 years agoDocument fit parameter extraction via PyYAML.
W. Trevor King [Sat, 28 Aug 2010 12:42:19 +0000 (08:42 -0400)]
Document fit parameter extraction via PyYAML.

9 years agoDocument --ui in doc/gui.txt.
W. Trevor King [Sat, 28 Aug 2010 11:38:47 +0000 (07:38 -0400)]
Document --ui in doc/gui.txt.

9 years agoAdded convenience --ui option to hooke.hooke.main().
W. Trevor King [Sat, 28 Aug 2010 11:34:27 +0000 (07:34 -0400)]
Added convenience --ui option to hooke.hooke.main().

9 years agoTrivial fixes to test/command_stack.py. Now test/ passes again.
W. Trevor King [Fri, 27 Aug 2010 23:00:21 +0000 (19:00 -0400)]
Trivial fixes to test/command_stack.py.  Now test/ passes again.

9 years agoDon't load curves becore clearing their command stack.
W. Trevor King [Fri, 27 Aug 2010 22:44:01 +0000 (18:44 -0400)]
Don't load curves becore clearing their command stack.

Loading a curve (which would happen if it had been unloaded before
being summoned by current_curve_callback) executes its command stack.
Since 'clear curve command stack' is only trying to remove the stack,
that stack execution is a waste of time.  With the unloaded callback,
we can remove the command stack without ever loading the curve.

9 years agoFix 'flat filter peaks' CommandMessage declaration in test/apply_command_stack_to_pla...
W. Trevor King [Fri, 27 Aug 2010 22:39:44 +0000 (18:39 -0400)]
Fix 'flat filter peaks' CommandMessage declaration in test/apply_command_stack_to_playlist.py

9 years agoDon't fail if Playlist.unload() is called on an unloaded Curve.
W. Trevor King [Fri, 27 Aug 2010 21:36:35 +0000 (17:36 -0400)]
Don't fail if Playlist.unload() is called on an unloaded Curve.

9 years agoDouble initial guess for the surface kink position.
W. Trevor King [Fri, 27 Aug 2010 21:31:39 +0000 (17:31 -0400)]
Double initial guess for the surface kink position.

The previous algorithm would fail for curves if
1) They didn't have many tension features to stretch out the range.
2) The contact slope "softened" a bit in the kink region.

For example, try it on most of the test/vclamp_picoforce data ;).

The new algorithm works perfectly on the ideal, boring curve:
    _______
   /
  /

9 years agoKeep Playlist._loaded up to date on Curve.unload() calls.
W. Trevor King [Fri, 27 Aug 2010 20:14:25 +0000 (16:14 -0400)]
Keep Playlist._loaded up to date on Curve.unload() calls.