-Welcome to the Hooke documentation!
-===================================
+Welcome
+=======
Hooke_ is software for the (semiautomatic) analysis and filtering of
force curves. Force curves are the output of an analytical technique
* Handles force-clamp force experiments (experimental)
* Extensible by users by mean of plugins and drivers
-Contents:
+Contents
+========
.. toctree::
:maxdepth: 2
- install.txt
- tutorial.txt
- config.txt
- hacking.txt
- hooke/hooke.txt
- doc.txt
+ install
+ tutorial
+ config
+ bugs
+ hacking
+ hooke/hooke
+ doc
Indices and tables
-==================
+------------------
-* :ref:`~genindex`
-* :ref:`~modindex`
-* :ref:`~search`
+* :ref:`genindex`
+* :ref:`modindex`
+* :ref:`search`
+
+.. todolist::
Publications
============
-Hooke has been published [1]. Please cite Hooke if you use it. Let us
-know, and we'll link to your paper!
+Hooke has been published [#sandal2009]_. Please cite Hooke if you use
+it. Let us know, and we'll link to your paper!
-[1] Sandal M, Benedetti F, Brucale M, Gomez-Casado A, Samorì B.,
+.. [#sandal2009] M. Sandal, F. Benedetti, M. Brucale, A. Gomez-Casado,
+ B. Samorì.
"Hooke: an open software platform for force spectroscopy."
Bioinformatics, 2009.
doi: `10.1093/bioinformatics/btp180 <http://dx.doi.org/10.1093/bioinformatics/btp180>`_
-
-Troubleshooting
-===============
-
-If you have troubles in using Hooke:
-
-1. Search the `issue tracker`_.
-2. Look at the `trouble shooting wiki page`_.
-3. Search the `discussion group`_.
-4. Ask a question in the discussion group.
-5. File a bug on the issue tracker.
-
-.. _issue tracker: http://code.google.com/p/hooke/issues/list
-.. _trouble shooting wiki page:
- http://code.google.com/p/hooke/wiki/TroubleShooting
-.. _discussion group: http://groups.google.com/group/hookesoftware
-
-
Disclaimer
==========
-Remember that Hooke is still experimental software! It has been mostly
-done to fit the needs of its authors, and there is no guarantee it
-will do what you need. However, you can write us/help us improve it so
-that it does. We aim to make of Hooke a little, universal tool that
-can help your research.
+Remember that Hooke is still experimental software! It has been
+mostly done to fit the needs of its authors, and there is no guarantee
+it will do what you need. However, you can write us/help us improve
+it so that it does.