test/tutorial.py

   1 # Copyright (C) 2010-2012 W. Trevor King <wking@drexel.edu>
   2 #
   3 # This file is part of Hooke.
   4 #
   5 # Hooke is free software: you can redistribute it and/or modify it
   6 # under the terms of the GNU Lesser General Public License as
   7 # published by the Free Software Foundation, either version 3 of the
   8 # License, or (at your option) any later version.
   9 #
  10 # Hooke is distributed in the hope that it will be useful, but WITHOUT
  11 # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
  12 # or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General
  13 # Public License for more details.
  14 #
  15 # You should have received a copy of the GNU Lesser General Public
  16 # License along with Hooke.  If not, see
  17 # <http://www.gnu.org/licenses/>.
  18
  19 """
  20 Test the commands listed in :file:`doc/tutorial.txt`.
  21
  22 >>> import os
  23 >>> import os.path
  24 >>> from hooke.hooke import Hooke, HookeRunner
  25 >>> h = Hooke()
  26 >>> r = HookeRunner()
  27
  28 *Help*
  29
  30 >>> h = r.run_lines(h, ['help'])  # doctest: +ELLIPSIS
  31 <BLANKLINE>
  32 Documented commands (type help <topic>):
  33 ========================================
  34 ...
  35 >>> h = r.run_lines(h, ['help load_playlist'])
  36 Usage: load_playlist [options]
  37 <BLANKLINE>
  38 Options:
  39   -h, --help            show this help message and exit
  40   --disable-stack       Add this command to appropriate command stacks. (True)
  41   --output_playlist=OUTPUT_PLAYLIST
  42                         Name of the new playlist (defaults to an auto-
  43                         generated name). (None)
  44   --drivers=DRIVERS     Drivers for loading curves. (None)
  45 <BLANKLINE>
  46 Load a playlist.
  47 <BLANKLINE>
  48 ----
  49 Usage: load_playlist [options] input
  50
  51 *Creating a playlist*
  52
  53 >>> h = r.run_lines(h, ['cd --path .'])
  54 Success
  55 <BLANKLINE>
  56 >>> h = r.run_lines(h, ['pwd'])  # doctest: +ELLIPSIS
  57 /.../hooke
  58 Success
  59 <BLANKLINE>
  60 >>> h = r.run_lines(h, ['ls'])  # doctest: +ELLIPSIS +REPORT_UDIFF
  61 .hg
  62 ...
  63 AUTHORS
  64 ...
  65 README
  66 ...
  67 hooke
  68 ...
  69 Success
  70 <BLANKLINE>
  71 >>> h = r.run_lines(h, ['new_playlist --output_playlist mylist'])
  72 <FilePlaylist mylist>
  73 Success
  74 <BLANKLINE>
  75 >>> h = r.run_lines(h, ['jump_to_playlist -- -1'])
  76 Success
  77 <BLANKLINE>
  78 >>> h = r.run_lines(h, ['get_playlist'])
  79 <FilePlaylist mylist>
  80 Success
  81 <BLANKLINE>
  82 >>> h = r.run_lines(h, ['glob_curves_to_playlist test/data/vclamp_picoforce/*']
  83 ...     )  # doctest: +ELLIPSIS
  84 <Curve 0x06130001>
  85 <Curve 0x07200000>
  86 <Curve 20071120a_i27_t33.100>
  87 <Curve 20071120a_i27_t33.101>
  88 ...
  89 <Curve 20071120a_i27_t33.199>
  90 Success
  91 <BLANKLINE>
  92 >>> playlist_already_exists = os.path.exists('mylist.hkp')
  93 >>> playlist_already_exists
  94 False
  95 >>> h = r.run_lines(h, ['save_playlist --output mylist'])
  96 Success
  97 <BLANKLINE>
  98 >>> h = r.run_lines(h, ['name_playlist my_old_list'])
  99 <FilePlaylist my_old_list>
 100 Success
 101 <BLANKLINE>
 102 >>> os.path.isfile('mylist.hkp')
 103 True
 104 >>> h = r.run_lines(h, ['load_playlist mylist.hkp'])
 105 <FilePlaylist mylist>
 106 Success
 107 <BLANKLINE>
 108 >>> if playlist_already_exists == False:
 109 ...     os.remove('mylist.hkp')
 110
 111 *Navigating the playlist*
 112
 113 >>> h = r.run_lines(h, ['get_curve'])
 114 <Curve 0x06130001>
 115 Success
 116 <BLANKLINE>
 117 >>> h = r.run_lines(h, ['next_curve'])
 118 Success
 119 <BLANKLINE>
 120 >>> h = r.run_lines(h, ['get_curve'])
 121 <Curve 0x07200000>
 122 Success
 123 <BLANKLINE>
 124 >>> h = r.run_lines(h, ['previous_curve'])
 125 Success
 126 <BLANKLINE>
 127 >>> h = r.run_lines(h, ['get_curve'])
 128 <Curve 0x06130001>
 129 Success
 130 <BLANKLINE>
 131 >>> h = r.run_lines(h, ['curve_index'])
 132 0
 133 Success
 134 <BLANKLINE>
 135 >>> h = r.run_lines(h, ['previous_curve'])
 136 Success
 137 <BLANKLINE>
 138 >>> h = r.run_lines(h, ['get_curve'])
 139 <Curve 20071120a_i27_t33.199>
 140 Success
 141 <BLANKLINE>
 142 >>> h = r.run_lines(h, ['curve_index'])
 143 101
 144 Success
 145 <BLANKLINE>
 146 >>> h = r.run_lines(h, ['next_curve'])
 147 Success
 148 <BLANKLINE>
 149 >>> h = r.run_lines(h, ['get_curve'])
 150 <Curve 0x06130001>
 151 Success
 152 <BLANKLINE>
 153 >>> h = r.run_lines(h, ['curve_index'])
 154 0
 155 Success
 156 <BLANKLINE>
 157 >>> h = r.run_lines(h, ['jump_to_curve 14'])
 158 Success
 159 <BLANKLINE>
 160 >>> h = r.run_lines(h, ['get_curve'])
 161 <Curve 20071120a_i27_t33.112>
 162 Success
 163 <BLANKLINE>
 164 >>> h = r.run_lines(h, ['curve_index'])
 165 14
 166 Success
 167 <BLANKLINE>
 168
 169 >>> [p for p in h.playlists]
 170 [<FilePlaylist my_old_list>, <FilePlaylist mylist>]
 171 >>> h = r.run_lines(h, ['get_playlist'])
 172 <FilePlaylist my_old_list>
 173 Success
 174 <BLANKLINE>
 175 >>> h = r.run_lines(h, ['next_playlist'])
 176 Success
 177 <BLANKLINE>
 178 >>> h = r.run_lines(h, ['get_playlist'])
 179 <FilePlaylist mylist>
 180 Success
 181 <BLANKLINE>
 182 >>> h = r.run_lines(h, ['previous_playlist'])
 183 Success
 184 <BLANKLINE>
 185 >>> h = r.run_lines(h, ['get_playlist'])
 186 <FilePlaylist my_old_list>
 187 Success
 188 <BLANKLINE>
 189 >>> h = r.run_lines(h, ['playlist_index'])
 190 0
 191 Success
 192 <BLANKLINE>
 193 >>> h = r.run_lines(h, ['previous_playlist'])
 194 Success
 195 <BLANKLINE>
 196 >>> h = r.run_lines(h, ['get_playlist'])
 197 <FilePlaylist mylist>
 198 Success
 199 <BLANKLINE>
 200 >>> h = r.run_lines(h, ['playlist_index'])
 201 1
 202 Success
 203 <BLANKLINE>
 204 >>> h = r.run_lines(h, ['next_playlist'])
 205 Success
 206 <BLANKLINE>
 207 >>> h = r.run_lines(h, ['get_playlist'])
 208 <FilePlaylist my_old_list>
 209 Success
 210 <BLANKLINE>
 211 >>> h = r.run_lines(h, ['playlist_index'])
 212 0
 213 Success
 214 <BLANKLINE>
 215 >>> h = r.run_lines(h, ['jump_to_playlist 1'])
 216 Success
 217 <BLANKLINE>
 218 >>> h = r.run_lines(h, ['get_playlist'])
 219 <FilePlaylist mylist>
 220 Success
 221 <BLANKLINE>
 222 >>> h = r.run_lines(h, ['playlist_index'])
 223 1
 224 Success
 225 <BLANKLINE>
 226
 227 *Taking notes*
 228
 229 See :file:`note.py`.
 230
 231 *Exporting curves*
 232
 233 See :file:`export_block.py`.
 234
 235 *Measuring distances and forces*
 236
 237 See :file:`delta.py`.
 238
 239 *Worm like chain and freely jointed chain fitting*
 240
 241 *Command stacks*
 242
 243 See :file:`command_stack.py`,
 244 :file:`apply_command_stack_to_playlist.py`, and
 245 :file:`command_stack_save_load.py`.
 246
 247 *Multiple curve analysis*
 248
 249 See :file:`multiple_curve_analysis`.
 250
 251 *Configuring Hooke*
 252
 253 See :file:`config.py`.
 254 """