1 # Copyright (C) 2008-2010 Fabrizio Benedetti
2 # Massimo Sandal <devicerandom@gmail.com>
3 # Rolf Schmidt <rschmidt@alcor.concordia.ca>
4 # W. Trevor King <wking@drexel.edu>
6 # This file is part of Hooke.
8 # Hooke is free software: you can redistribute it and/or modify it
9 # under the terms of the GNU Lesser General Public License as
10 # published by the Free Software Foundation, either version 3 of the
11 # License, or (at your option) any later version.
13 # Hooke is distributed in the hope that it will be useful, but WITHOUT
14 # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
15 # or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General
16 # Public License for more details.
18 # You should have received a copy of the GNU Lesser General Public
19 # License along with Hooke. If not, see
20 # <http://www.gnu.org/licenses/>.
22 """Hooke - A force spectroscopy review & analysis tool.
25 if False: # Queue pickle error debugging code
26 """The Hooke class is passed back from the CommandEngine process
27 to the main process via a :class:`multiprocessing.queues.Queue`,
28 which uses :mod:`pickle` for serialization. There are a number of
29 objects that are unpicklable, and the error messages are not
30 always helpful. This block of code hooks you into the Queue's
31 _feed method so you can print out useful tidbits to help find the
32 particular object that is gumming up the pickle works.
34 import multiprocessing.queues
36 feed = multiprocessing.queues.Queue._feed
37 def new_feed (buffer, notempty, send, writelock, close):
39 print 'SEND:', obj, dir(obj)
41 attr = getattr(obj, a)
42 #print ' ', a, attr, type(attr)
43 if obj.__class__.__name__ == 'Hooke':
44 # Set suspect attributes to None until you resolve the
45 # PicklingError. Then fix whatever is breaking the
54 feed(buffer, notempty, s, writelock, close)
55 multiprocessing.queues.Queue._feed = staticmethod(new_feed)
59 import multiprocessing
69 from . import config as config_mod
70 from . import playlist
71 from . import plugin as plugin_mod
72 from . import driver as driver_mod
77 def __init__(self, config=None, debug=0):
79 default_settings = (config_mod.DEFAULT_SETTINGS
80 + plugin_mod.default_settings()
81 + driver_mod.default_settings()
82 + ui.default_settings())
84 config = config_mod.HookeConfigParser(
85 paths=config_mod.DEFAULT_PATHS,
86 default_settings=default_settings)
93 self.engine = engine.CommandEngine()
94 self.playlists = playlist.NoteIndexList()
97 config_file = StringIO.StringIO()
98 self.config.write(config_file)
99 logging.config.fileConfig(StringIO.StringIO(config_file.getvalue()))
100 # Don't attach the logger because it contains an unpicklable
101 # thread.lock. Instead, grab it directly every time you need it.
102 #self.log = logging.getLogger('hooke')
104 def load_plugins(self):
105 self.plugins = plugin_mod.load_graph(
106 plugin_mod.PLUGIN_GRAPH, self.config, include_section='plugins')
108 for plugin in self.plugins:
109 self.commands.extend(plugin.commands())
110 self.command_by_name = dict(
111 [(c.name, c) for c in self.commands])
113 def load_drivers(self):
114 self.drivers = plugin_mod.load_graph(
115 driver_mod.DRIVER_GRAPH, self.config, include_section='drivers')
118 self.ui = ui.load_ui(self.config)
121 self.config.write() # Does not preserve original comments
123 def run_command(self, command, arguments):
124 """Run `command` with `arguments` using
125 :meth:`~hooke.engine.CommandEngine.run_command`.
127 Allows for running commands without spawning another process
128 as in :class:`HookeRunner`.
130 self.engine.run_command(self, command, arguments)
133 class HookeRunner (object):
134 def run(self, hooke):
135 """Run Hooke's main execution loop.
137 Spawns a :class:`hooke.engine.CommandEngine` subprocess and
138 then runs the UI, rejoining the `CommandEngine` process after
141 ui_to_command,command_to_ui,command = self._setup_run(hooke)
143 hooke.ui.run(hooke.commands, ui_to_command, command_to_ui)
145 hooke = self._cleanup_run(ui_to_command, command_to_ui, command)
148 def run_lines(self, hooke, lines):
149 """Run the pre-set commands `lines` with the "command line" UI.
151 Allows for non-interactive sessions that are otherwise
152 equivalent to :meth:'.run'.
154 cmdline = ui.load_ui(hooke.config, 'command line')
155 ui_to_command,command_to_ui,command = self._setup_run(hooke)
158 hooke.commands, ui_to_command, command_to_ui, lines)
160 hooke = self._cleanup_run(ui_to_command, command_to_ui, command)
163 def _setup_run(self, hooke):
164 ui_to_command = multiprocessing.Queue()
165 command_to_ui = multiprocessing.Queue()
166 manager = multiprocessing.Manager()
167 command = multiprocessing.Process(name='command engine',
168 target=hooke.engine.run, args=(hooke, ui_to_command, command_to_ui))
170 return (ui_to_command, command_to_ui, command)
172 def _cleanup_run(self, ui_to_command, command_to_ui, command):
173 log = logging.getLogger('hooke')
174 log.debug('cleanup sending CloseEngine')
175 ui_to_command.put(engine.CloseEngine())
177 while not isinstance(hooke, Hooke):
178 log.debug('cleanup waiting for Hooke instance from the engine.')
179 hooke = command_to_ui.get(block=True)
180 log.debug('cleanup got %s instance' % type(hooke))
186 p = optparse.OptionParser()
188 '--version', dest='version', default=False, action='store_true',
189 help="Print Hooke's version information and exit.")
191 '-s', '--script', dest='script', metavar='FILE',
192 help='Script of command line Hooke commands to run.')
194 '-c', '--command', dest='commands', metavar='COMMAND',
195 action='append', default=[],
196 help='Add a command line Hooke command to run.')
198 '--command-no-exit', dest='command_exit',
199 action='store_false', default=True,
200 help="Don't exit after running a script or commands.")
202 '--debug', dest='debug', action='store_true', default=False,
203 help="Enable debug logging.")
204 options,arguments = p.parse_args()
205 if len(arguments) > 0:
206 print >> sys.stderr, 'More than 0 arguments to %s: %s' \
207 % (sys.argv[0], arguments)
208 p.print_help(sys.stderr)
211 hooke = Hooke(debug=__debug__)
212 runner = HookeRunner()
214 if options.version == True:
217 if options.debug == True:
219 section='handler_hand1', option='level', value='NOTSET')
221 if options.script != None:
222 with open(os.path.expanduser(options.script), 'r') as f:
223 options.commands.extend(f.readlines())
224 if len(options.commands) > 0:
226 hooke = runner.run_lines(hooke, options.commands)
228 if options.command_exit == True:
233 hooke = runner.run(hooke)