1 # Copyright (C) 2010 W. Trevor King <wking@drexel.edu>
3 # This file is part of Hooke.
5 # Hooke is free software: you can redistribute it and/or modify it
6 # under the terms of the GNU Lesser General Public License as
7 # published by the Free Software Foundation, either version 3 of the
8 # License, or (at your option) any later version.
10 # Hooke is distributed in the hope that it will be useful, but WITHOUT
11 # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
12 # or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General
13 # Public License for more details.
15 # You should have received a copy of the GNU Lesser General Public
16 # License along with Hooke. If not, see
17 # <http://www.gnu.org/licenses/>.
19 """Define :class:`Experiment` and assorted subclasses.
21 This allows :class:`hooke.plugin.Plugin`\s to specify the types of
22 experiments they can handle.
25 class Experiment (object):
26 """Base class for experiment classification.
30 class ForceClamp (Experiment):
31 """Constant force force spectroscopy [#fernandez2004]_.
33 .. [#fernandez2004] J.M. Fernandez, H. Li.
34 "Force-Clamp Spectroscopy Monitors the Folding Trajectory of a
37 doi: `10.1126/science.1092497 <http://dx.doi.org/10.1126/science.1092497>`_
41 class VelocityClamp (Experiment):
42 """Constant piezo velocity force spectroscopy [#rief1997]_.
44 .. [#rief1997] M. Rief, M. Gautel, F. Oesterhelt, J.M. Fernandez,
46 "Reversible Unfolding of Individual Titin Immunoglobulin Domains by AFM."
48 doi: `10.1126/science.276.5315.1109 <http://dx.doi.org/10.1126/science.276.5315.1109>`_
52 class TwoColorCoincidenceDetection (Experiment):
53 """Two-color fluorescence coincidence spectroscopy [#clarke2007]_.
55 .. [#clarke2007] R.W. Clarke, A. Orte, D. Klenerman.
56 "Optimized Threshold Selection for Single-Molecule Two-Color
57 Fluorescence Coincidence Spectroscopy."
59 doi: `10.1021/ac062188w <http://dx.doi.org/10.1021/ac062188w>`_