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thesis.git
2010-10-16 W. Trevor KingSet custom keys for uniprot entries. commit | commitdiff | tree | snapshot
2010-10-16 W. Trevor KingDifferentiate Best2008 bibtex entries. commit | commitdiff | tree | snapshot
2010-10-16 W. Trevor KingRemoved duplicate keywords fields from staple08. commit | commitdiff | tree | snapshot
2010-10-16 W. Trevor KingRemove duplicate note field from ciccotti86. commit | commitdiff | tree | snapshot
2010-10-16 W. Trevor KingRemove duplicate note field from ryckaert77. commit | commitdiff | tree | snapshot
2010-10-16 W. Trevor KingConsolitate duplicate schlierf04 entries. commit | commitdiff | tree | snapshot
2010-10-16 W. Trevor KingCorrect DeGrado -> WDeGrado typo. commit | commitdiff | tree | snapshot
2010-10-16 W. Trevor KingCorrect <X>BrowerToland -> BDBrowerToland typos. commit | commitdiff | tree | snapshot
2010-10-16 W. Trevor KingCorrect VMontant -> VMontana typo. commit | commitdiff | tree | snapshot
2010-10-16 W. Trevor KingCorrect MGau -> MGao typo. commit | commitdiff | tree | snapshot
2010-10-16 W. Trevor KingCorrections to root.bib before reformating with pybtex. commit | commitdiff | tree | snapshot
2010-06-13 W. Trevor Kingunfolding.asy also needs base_afm.asy. commit | commitdiff | tree | snapshot
2010-06-13 W. Trevor KingUse \text intead of \mathrm in \supScript. commit | commitdiff | tree | snapshot
2010-06-13 W. Trevor KingDedicate to Heaven. commit | commitdiff | tree | snapshot
2010-05-02 W. Trevor KingAdded open source highlights to acknowledgments commit | commitdiff | tree | snapshot
2010-05-02 W. Trevor KingMoved remaining text portions of root.tex into src... commit | commitdiff | tree | snapshot
2010-05-02 W. Trevor KingOnly define \U{} and \E{} workarounds in wtk_graph... commit | commitdiff | tree | snapshot
2010-05-02 W. Trevor KingAdd fit lines to cantilever-sim/v-dep commit | commitdiff | tree | snapshot
2010-05-02 W. Trevor KingConverted sim-hist from Gnuplot to Asymptote. commit | commitdiff | tree | snapshot
2010-05-02 W. Trevor KingConvert kappa-sawteeth from Gnuplot to Asymptote. commit | commitdiff | tree | snapshot
2010-05-02 W. Trevor KingConvert expt-sawtooth from Gnuplot to Asymptote. commit | commitdiff | tree | snapshot
2010-05-01 W. Trevor KingWith the newer x/y column flexibility, remove fig3a... commit | commitdiff | tree | snapshot
2010-05-01 W. Trevor KingConverted order-dep from Gnuplot to Asymptote. commit | commitdiff | tree | snapshot
2010-05-01 W. Trevor KingConverted sim-sawtooth from Gnuplot to Asymptote. commit | commitdiff | tree | snapshot
2010-05-01 W. Trevor KingMake v-dep shorter (the caption used to overflow the... commit | commitdiff | tree | snapshot
2010-05-01 W. Trevor KingAvoid non-standard macros (they seem to break Asymptote... commit | commitdiff | tree | snapshot
2010-05-01 W. Trevor KingAdded histrograms to v-dep-sd, and legends to both... commit | commitdiff | tree | snapshot
2010-04-30 W. Trevor KingConverted figures/v-dep from Gnuplot to Asympote (excep... commit | commitdiff | tree | snapshot
2010-04-30 W. Trevor KingEnsure the 'asytools' and 'pyfit' aliases are defined... commit | commitdiff | tree | snapshot
2010-04-30 W. Trevor KingRemove figure/scripts duplicate of figure/script (added... commit | commitdiff | tree | snapshot
2010-04-30 W. Trevor KingFixed tuple-concat error in site_init._recursive_glob_dir commit | commitdiff | tree | snapshot
2010-04-30 W. Trevor KingAdded pyfit script using Python's SciPy module for... commit | commitdiff | tree | snapshot
2010-04-30 W. Trevor KingPulled subdirs() functionality into it's own fn in... commit | commitdiff | tree | snapshot
2010-04-29 W. Trevor KingGeneralized wtk_graph functions to allow user-controlle... commit | commitdiff | tree | snapshot
2010-04-29 W. Trevor KingAdd Alias('bibtex-files') dependency as SCons' LaTeX... commit | commitdiff | tree | snapshot
2010-04-29 W. Trevor KingAdd king_vs_best dependency rules to SCons build tree commit | commitdiff | tree | snapshot
2010-04-29 W. Trevor KingRework Alias('asymptote-figures'). Previous implementa... commit | commitdiff | tree | snapshot
2010-04-29 W. Trevor KingAdjustments to graphMatrixFile for much smaller output. commit | commitdiff | tree | snapshot
2010-04-28 W. Trevor KingFix exponent "^-1" -> "^{-1}" in fit-valley.asy commit | commitdiff | tree | snapshot
2010-04-28 W. Trevor KingRemoved wtk_graph.asy symlink from fit-space commit | commitdiff | tree | snapshot
2010-04-28 W. Trevor KingConverted figures/fit-space/fig.gp to fit-valley.asy. commit | commitdiff | tree | snapshot
2010-04-28 W. Trevor KingAdd Alias('asymptote-figures') for explicit \asyfig... commit | commitdiff | tree | snapshot
2010-04-28 W. Trevor KingAdd dsfont files to src/packages/ commit | commitdiff | tree | snapshot
2010-04-28 W. Trevor KingAdd explicit dependency thesis -> Alias('extra-packages'). commit | commitdiff | tree | snapshot
2010-04-28 W. Trevor KingReally build thesis.pdf vs. old dummy Touch command. commit | commitdiff | tree | snapshot
2010-04-28 W. Trevor KingOnly add DISPLAY to the SCons build environment if... commit | commitdiff | tree | snapshot
2010-04-28 W. Trevor KingMerge SCons transition with some Gnuplot->Asymptote... commit | commitdiff | tree | snapshot
2010-04-28 W. Trevor KingRemoved Gnuplot portions of cantilever-data/v-dep commit | commitdiff | tree | snapshot
2010-04-28 W. Trevor KingAdded untested graphMatrixFile to wtk_graph.asy commit | commitdiff | tree | snapshot
2010-04-28 W. Trevor KingTranitioned king_vs_best from Gnuplot to Asymptote commit | commitdiff | tree | snapshot
2010-04-28 W. Trevor Kingsdfont -> dsfont typo correction commit | commitdiff | tree | snapshot
2010-04-17 W. Trevor KingTransitioned build system from Make to SCons commit | commitdiff | tree | snapshot
2010-04-08 W. Trevor KingRemoved fit-space/fit.log commit | commitdiff | tree | snapshot
2010-04-08 W. Trevor KingAdd improved extract_fit_valley.py to fit-space Makefil... commit | commitdiff | tree | snapshot
2010-04-06 W. Trevor KingUse mathds over mathbb for double struck fonts commit | commitdiff | tree | snapshot
2010-04-04 W. Trevor KingFix DOI for wking10 in root.bib commit | commitdiff | tree | snapshot
2010-04-01 W. Trevor KingNeed to run latex between bibtex runs to resolve citati... commit | commitdiff | tree | snapshot
2010-03-19 W. Trevor KingMerge branch 'master' of ssh://einstein/~/public_html... commit | commitdiff | tree | snapshot
2010-03-18 W. Trevor KingFix Kpathsea search path configuration in asyprocess. commit | commitdiff | tree | snapshot
2010-03-15 W. Trevor KingFix \notation -> \nomenclature in singledomain_constant... commit | commitdiff | tree | snapshot
2010-03-15 W. Trevor KingFixed cantilever-data figure Makefile dependencies... commit | commitdiff | tree | snapshot
2010-03-15 W. Trevor KingAdded \equiv to the notation list. commit | commitdiff | tree | snapshot
2010-03-15 W. Trevor KingCompleted cantilever data figure integration. commit | commitdiff | tree | snapshot
2010-03-15 W. Trevor KingRenamed "plot-splits" to the more obvious "v-dep" commit | commitdiff | tree | snapshot
2010-03-15 W. Trevor KingWorking cantilever-data generation into the Makefile commit | commitdiff | tree | snapshot
2010-03-15 W. Trevor KingBrought in cantilever-data generation scripts. commit | commitdiff | tree | snapshot
2010-03-15 W. Trevor KingAdded temporary caption to fig:cantilever:loading-rate... commit | commitdiff | tree | snapshot
2010-03-15 W. Trevor KingAdded monte-carlo.asy figure (and the epsdice package... commit | commitdiff | tree | snapshot
2010-03-14 W. Trevor KingCleaned up cantilever-calib equations. commit | commitdiff | tree | snapshot
2010-03-12 W. Trevor KingUse a bit less negative space for \logp{} commit | commitdiff | tree | snapshot
2010-03-12 W. Trevor KingFixed the bulk of Mom's remaining typos and clarificati... commit | commitdiff | tree | snapshot
2010-03-12 W. Trevor KingFixed typos Mom found in the appenidicies + switched... commit | commitdiff | tree | snapshot
2010-03-11 W. Trevor KingAddressed Mom's concerns about WLC indexing and fixed... commit | commitdiff | tree | snapshot
2010-03-11 W. Trevor KingAdd Index and Nomenclature sections commit | commitdiff | tree | snapshot
2010-02-25 W. Trevor KingMoved figures/contour/contour.asy to asyfig workflow commit | commitdiff | tree | snapshot
2010-02-25 W. Trevor KingFix i_dep.d -> i-dep.d commit | commitdiff | tree | snapshot
2010-02-25 W. Trevor KingAdd FIGS variable to asyprocess Makefiles to reduce... commit | commitdiff | tree | snapshot
2010-02-25 W. Trevor KingAdded labels to cantilever simulation figures commit | commitdiff | tree | snapshot
2010-02-25 W. Trevor KingPull out cantilever peak index simulation figure. commit | commitdiff | tree | snapshot
2010-02-25 W. Trevor KingUse packages.tex in asyprocess calls commit | commitdiff | tree | snapshot
2010-02-25 W. Trevor KingWorking my 2009 Biophys Soc poster into cantilever/ commit | commitdiff | tree | snapshot
2010-02-23 W. Trevor KingFix other errata listed on wiki.creativecommons.org... commit | commitdiff | tree | snapshot
2010-02-23 W. Trevor KingAdded I27 introduction to sec:cantilever commit | commitdiff | tree | snapshot
2010-02-23 W. Trevor KingAdded Introduction \section{Thesis Outline}. commit | commitdiff | tree | snapshot
2010-02-23 W. Trevor KingChanged title to "Mechanical protein unfolding analysis" commit | commitdiff | tree | snapshot
2010-02-23 W. Trevor KingOops. \copyrightCCBYSA -> \copyrighttextCCBYSA commit | commitdiff | tree | snapshot
2010-02-23 W. Trevor KingMove Sawsim into paragraph fully into sawsim/introducti... commit | commitdiff | tree | snapshot
2010-02-23 W. Trevor KingGNU FDL too restrictive, use CC-by-sa instead. commit | commitdiff | tree | snapshot
2010-02-23 W. Trevor KingTied unfolding model paragraph into single molecule... commit | commitdiff | tree | snapshot
2010-02-23 W. Trevor KingFix drexe -> drexel typos in README URLs commit | commitdiff | tree | snapshot
2010-02-23 W. Trevor KingUse \chapter{}, \section{}, and \ref{} in fdl.txt. commit | commitdiff | tree | snapshot
2010-02-22 W. Trevor KingAdded FDL appendix commit | commitdiff | tree | snapshot
2010-02-22 W. Trevor KingAdded README and COPYING (GNU FDL) commit | commitdiff | tree | snapshot
2010-02-22 W. Trevor KingAdded "Double T" folding pathway example commit | commitdiff | tree | snapshot
2010-02-22 W. Trevor KingAdded pathway / landscape folding model paragraph commit | commitdiff | tree | snapshot
2010-02-22 W. Trevor KingWorking through ligand/receptor figure commit | commitdiff | tree | snapshot
2010-02-22 W. Trevor KingWorking through introductory citations, HGP and Levinthal. commit | commitdiff | tree | snapshot
2010-02-18 W. Trevor KingFix figure 1.1 referencing/labeling commit | commitdiff | tree | snapshot
2010-02-18 W. Trevor KingMerge branch 'master' of yang:./rsrch/notes/thesis commit | commitdiff | tree | snapshot
2010-02-18 W. Trevor KingSome work cleaning up the introductory text commit | commitdiff | tree | snapshot
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My thesis!