From f986caac490905d7a2de2401c41e1d422f71bab1 Mon Sep 17 00:00:00 2001
From: "W. Trevor King" <wking@tremily.us>
Date: Mon, 2 Jul 2012 12:30:51 -0400
Subject: [PATCH] Stub out pyafm and calibcant chapters.

Add Prof. Cruz as an advisor.
---
 src/calibcant/main.tex | 14 ++++++++++++++
 src/pyafm/main.tex     | 16 ++++++++++++++++
 src/root.tex           |  9 ++++++---
 3 files changed, 36 insertions(+), 3 deletions(-)
 create mode 100644 src/calibcant/main.tex
 create mode 100644 src/pyafm/main.tex

diff --git a/src/calibcant/main.tex b/src/calibcant/main.tex
new file mode 100644
index 0000000..499dad5
--- /dev/null
+++ b/src/calibcant/main.tex
@@ -0,0 +1,14 @@
+\chapter{Cantilever spring constant calibration}
+\label{sec:calibcant}
+
+\section{Thermal calibration}
+\subsection{Overdamped case}
+\subsection{General solution}
+\section{Calibcant}
+\subsection{Photodiode calibration}
+\subsection{Temperature measurements}
+\subsection{Thermal vibration}
+\section{Discussion}
+\subsection{Propogation of errors}
+\subsection{Archiving experimental data}
+\section{Conclusions}
diff --git a/src/pyafm/main.tex b/src/pyafm/main.tex
new file mode 100644
index 0000000..d8b9b34
--- /dev/null
+++ b/src/pyafm/main.tex
@@ -0,0 +1,16 @@
+\chapter{Experiment control software, \pyafm and related packages}
+\label{sec:pyafm}
+
+\section{Analog input output frameworks}
+\subsection{LabVIEW}
+\subsection{Comedi}
+\section{The pyafm stack}
+\subsection{Pycomedi}
+\subsection{Pypiezo}
+\subsection{Pyafm}
+\section{Auxilliary packages}
+\subsection{h5config}
+\subsection{stepper}
+\subsection{pypid}
+\section{Discussion}
+\section{Conclusions}
diff --git a/src/root.tex b/src/root.tex
index f4f2f75..1ecaa88 100644
--- a/src/root.tex
+++ b/src/root.tex
@@ -23,11 +23,12 @@
 %}
 
 \author{William Trevor King}
-\title{Temperature and cantilever dependent protein unfolding}
+\title{Open source single molecule force spectroscopy}
 \DUTmonth{July}
 \DUTyear{2012}
 \degree{Doctor of Philosophy}
 \advisor{Guoliang Yang, Ph.D.}
+\advisor{Louis Cruz Cruz, Ph.D.}
 \copyrighttext{\copyrighttextCCBYSA}
 
 \input{packages}
@@ -63,8 +64,10 @@ defaultpen(fontsize(10));  // match drexel-thesis's default 10pt font size
 \include{introduction/main}
 \include{apparatus/main}
 \include{sawsim/main}
-\include{temperature/main}
-\include{cantilever/main}
+\include{pyafm/main}
+\include{calibcant/main}
+%\include{temperature/main}
+%\include{cantilever/main}
 \include{future/main}
 \end{thesis}
 
-- 
2.26.2