From d923ee66e7cca27851fa0b1a7af9031c3233bc70 Mon Sep 17 00:00:00 2001 From: Patrick McLean Date: Tue, 19 Nov 2019 17:24:00 -0800 Subject: [PATCH] dev-python/numpy: Version bump to 1.17.4, add python3.8 This also drops python2.7 since upstream no longer supports it. Copyright: Sony Interactive Entertainment Inc. Package-Manager: Portage-2.3.79, Repoman-2.3.18 Signed-off-by: Patrick McLean --- dev-python/numpy/Manifest | 1 + .../files/numpy-1.17.4-no-hardcode-blas.patch | 55 ++++++ dev-python/numpy/numpy-1.17.4.ebuild | 157 ++++++++++++++++++ 3 files changed, 213 insertions(+) create mode 100644 dev-python/numpy/files/numpy-1.17.4-no-hardcode-blas.patch create mode 100644 dev-python/numpy/numpy-1.17.4.ebuild diff --git a/dev-python/numpy/Manifest b/dev-python/numpy/Manifest index d1b4c64c85e7..972c6ff7b69a 100644 --- a/dev-python/numpy/Manifest +++ b/dev-python/numpy/Manifest @@ -2,6 +2,7 @@ DIST numpy-1.14.5.zip 4904624 BLAKE2B 14d266bf1139b9539e39d08a6537e2b772e80bf46a DIST numpy-1.15.4.zip 4473522 BLAKE2B c030ef4a06c84091eec11b6602422468bd0674489a2c7fea1230132cd3a3ca1b10ec87eeb6788f2f263943f9ac43026dc1e7f0f5f1d52e9d1cc6934a5d361090 SHA512 9e0516da04368f0353fb7e3cc2c72e1ec936042908309732a298405bd7111e712899627b82f3674295b611e0ebfd74ef91d693f065fe9cb03dc7de23d1e72676 DIST numpy-1.16.1.zip 5070040 BLAKE2B 0429d27d88ec97e207822c9c7fa759453bbef97d1d5fdf3e68dab21ca098a6321e2e57d85561dd99084d190b8ed6fce20f00b421c8d14a249fc45dc1ea09569e SHA512 e4adce4f40a3cb6ac482f82db9fcd079179b03b0e878920cfc7d98b9f622adab997c68af892b209f417d5f31b4123a1c5ff5c07cf5b0aaa496d8be6c8354bde8 DIST numpy-1.16.5.zip 5138208 BLAKE2B f5511650e66939a6ce21cfad7874aecdeb6c07a70b32419a808956e42c7819d82bb364f1632da91b4d8a5237001c8ae3cbdcac10651fa0acca9558bdeafb5437 SHA512 6dd790ff57fdb7e7b0bddb47ea2b70b2667edefe632548ec68934e12a16af4a51bed9726e495c4993aad4c448dc4a204d0a087577d43dcfc9fa0164eb1d4b898 +DIST numpy-1.17.4.zip 6366657 BLAKE2B 89f729bb0740fa721dfe8d1165094a96302fde1e8c272689c11cb4a9bb39d11afaf6eda3ded8a370333b47b9d1ee25e8cb0a602c8cf44964612342c50ea5824f SHA512 f3264be7152437d71718da4728222962013ebd7fe02288d5063f1c763d1c4eee26485c27e8088f4dff79a4d491bc9f191849748c6007d093d22e89c6bff317f3 DIST numpy-1.8.2.tar.gz 3792998 BLAKE2B 00d22c72ab6f919626d3fba0edc477fb9c19f9c299f78cff6102e1860e3d1baec8f3b17aa23be797e9a34630428174de3f3b630c3f05c5340024dc6314fad8cd SHA512 996e6b8e2d42f223e44660f56bf73eb8ab124f400d89218f8f5e4d7c9860ada44a4d7c54526137b0695c7a10f36e8834fbf0d42b7cb20bcdb5d5c245d673385c DIST numpy-html-1.14.5.zip 11197881 BLAKE2B 00cac3c5be07f644328acd9ed155a6fc07ed7d7380584732bb3ac03562c8705cd152612f461d5dc251dabe0be4ba45593165a961496e351110e1aa7598c37370 SHA512 578d31660de4e1f57310b3a2137cefea17228f40046eef1689fb6d9302f0fe0fda5aaf473c3b8c69ae781049950022321593ec891a5640e3c36c886ab3bf4383 DIST numpy-html-1.15.4.zip 11158615 BLAKE2B eb264cd51fd61b389e858300d96be63f8e2eeaa0b7346beac571b62d96867d6820c19d5043a6f81088dc52b1e4d7f3f295e02ff5ff90351b0feccf657ce90001 SHA512 1cad60013f374f456bbb1fb6161545a94e252205c28054f9b33cde65330772ab243339289517a8825957a21e210455d33bcc0b9c588052c49c88257b1b04facb diff --git a/dev-python/numpy/files/numpy-1.17.4-no-hardcode-blas.patch b/dev-python/numpy/files/numpy-1.17.4-no-hardcode-blas.patch new file mode 100644 index 000000000000..8c2a58a19401 --- /dev/null +++ b/dev-python/numpy/files/numpy-1.17.4-no-hardcode-blas.patch @@ -0,0 +1,55 @@ +diff --git a/numpy/distutils/system_info.py b/numpy/distutils/system_info.py +index ba2b1f46c..09db18e69 100644 +--- a/numpy/distutils/system_info.py ++++ b/numpy/distutils/system_info.py +@@ -374,28 +374,7 @@ def get_info(name, notfound_action=0): + 1 - display warning message + 2 - raise error + """ +- cl = {'atlas': atlas_info, # use lapack_opt or blas_opt instead +- 'atlas_threads': atlas_threads_info, # ditto +- 'atlas_blas': atlas_blas_info, +- 'atlas_blas_threads': atlas_blas_threads_info, +- 'lapack_atlas': lapack_atlas_info, # use lapack_opt instead +- 'lapack_atlas_threads': lapack_atlas_threads_info, # ditto +- 'atlas_3_10': atlas_3_10_info, # use lapack_opt or blas_opt instead +- 'atlas_3_10_threads': atlas_3_10_threads_info, # ditto +- 'atlas_3_10_blas': atlas_3_10_blas_info, +- 'atlas_3_10_blas_threads': atlas_3_10_blas_threads_info, +- 'lapack_atlas_3_10': lapack_atlas_3_10_info, # use lapack_opt instead +- 'lapack_atlas_3_10_threads': lapack_atlas_3_10_threads_info, # ditto +- 'flame': flame_info, # use lapack_opt instead +- 'mkl': mkl_info, +- # openblas which may or may not have embedded lapack +- 'openblas': openblas_info, # use blas_opt instead +- # openblas with embedded lapack +- 'openblas_lapack': openblas_lapack_info, # use blas_opt instead +- 'openblas_clapack': openblas_clapack_info, # use blas_opt instead +- 'blis': blis_info, # use blas_opt instead +- 'lapack_mkl': lapack_mkl_info, # use lapack_opt instead +- 'blas_mkl': blas_mkl_info, # use blas_opt instead ++ cl = {'flame': flame_info, # use lapack_opt instead + 'accelerate': accelerate_info, # use blas_opt instead + 'x11': x11_info, + 'fft_opt': fft_opt_info, +@@ -796,10 +775,7 @@ class system_info(object): + return [b for b in [a.strip() for a in libs.split(',')] if b] + + def get_libraries(self, key='libraries'): +- if hasattr(self, '_lib_names'): +- return self.get_libs(key, default=self._lib_names) +- else: +- return self.get_libs(key, '') ++ return self.get_libs(key, '') + + def library_extensions(self): + c = customized_ccompiler() +@@ -1842,7 +1818,7 @@ class blas_info(system_info): + lib = self.get_cblas_libs(info) + if lib is not None: + info['language'] = 'c' +- info['libraries'] = lib ++ info['libraries'] = [lib] + info['define_macros'] = [('HAVE_CBLAS', None)] + self.set_info(**info) + diff --git a/dev-python/numpy/numpy-1.17.4.ebuild b/dev-python/numpy/numpy-1.17.4.ebuild new file mode 100644 index 000000000000..607f5f55d31f --- /dev/null +++ b/dev-python/numpy/numpy-1.17.4.ebuild @@ -0,0 +1,157 @@ +# Copyright 1999-2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{5,6,7,8} ) +PYTHON_REQ_USE="threads(+)" + +FORTRAN_NEEDED=lapack + +inherit distutils-r1 flag-o-matic fortran-2 multiprocessing toolchain-funcs + +DOC_PV="1.16.4" +DESCRIPTION="Fast array and numerical python library" +HOMEPAGE="https://www.numpy.org" +SRC_URI=" + mirror://pypi/${PN:0:1}/${PN}/${P}.zip + doc? ( + https://numpy.org/doc/$(ver_cut 1-2 ${DOC_PV})/numpy-html.zip -> numpy-html-${DOC_PV}.zip + https://numpy.org/doc/$(ver_cut 1-2 ${DOC_PV})/numpy-ref.pdf -> numpy-ref-${DOC_PV}.pdf + https://numpy.org/doc/$(ver_cut 1-2 ${DOC_PV})/numpy-user.pdf -> numpy-user-${DOC_PV}.pdf + )" +LICENSE="BSD" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~x64-solaris ~x86-solaris" +IUSE="doc lapack test" +RESTRICT="!test? ( test )" + +RDEPEND=" + lapack? ( + virtual/cblas + virtual/lapack + )" +DEPEND="${RDEPEND}" +BDEPEND="app-arch/unzip + dev-python/setuptools[${PYTHON_USEDEP}] + lapack? ( virtual/pkgconfig ) + test? ( + dev-python/pytest[${PYTHON_USEDEP}] + )" + +PATCHES=( + "${FILESDIR}"/${PN}-1.17.4-no-hardcode-blas.patch +) + +src_unpack() { + default + if use doc; then + unzip -qo "${DISTDIR}"/numpy-html-${DOC_PV}.zip -d html || die + fi +} + +pc_incdir() { + $(tc-getPKG_CONFIG) --cflags-only-I $@ | \ + sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||' +} + +pc_libdir() { + $(tc-getPKG_CONFIG) --libs-only-L $@ | \ + sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||' +} + +pc_libs() { + $(tc-getPKG_CONFIG) --libs-only-l $@ | \ + sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \ + -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \ + | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||' +} + +python_prepare_all() { + if use lapack; then + append-ldflags "$($(tc-getPKG_CONFIG) --libs-only-other cblas lapack)" + local incdir="${EPREFIX}"/usr/include + local libdir="${EPREFIX}"/usr/$(get_libdir) + cat >> site.cfg <<-EOF || die + [blas] + include_dirs = $(pc_incdir cblas):${incdir} + library_dirs = $(pc_libdir cblas blas):${libdir} + blas_libs = $(pc_libs cblas blas) + [lapack] + library_dirs = $(pc_libdir lapack):${libdir} + lapack_libs = $(pc_libs lapack) + EOF + else + export {ATLAS,PTATLAS,BLAS,LAPACK,MKL}=None + fi + + export CC="$(tc-getCC) ${CFLAGS}" + + append-flags -fno-strict-aliasing + + # See progress in http://projects.scipy.org/scipy/numpy/ticket/573 + # with the subtle difference that we don't want to break Darwin where + # -shared is not a valid linker argument + if [[ ${CHOST} != *-darwin* ]]; then + append-ldflags -shared + fi + + # only one fortran to link with: + # linking with cblas and lapack library will force + # autodetecting and linking to all available fortran compilers + append-fflags -fPIC + if use lapack; then + NUMPY_FCONFIG="config_fc --noopt --noarch" + # workaround bug 335908 + [[ $(tc-getFC) == *gfortran* ]] && NUMPY_FCONFIG+=" --fcompiler=gnu95" + fi + + # don't version f2py, we will handle it. + sed -i -e '/f2py_exe/s: + os\.path.*$::' numpy/f2py/setup.py || die + + # disable fuzzed tests + find numpy/*/tests -name '*.py' -exec sed -i \ + -e 's:def \(.*_fuzz\):def _\1:' {} + || die + # very memory- and disk-hungry + sed -i -e 's:test_large_zip:_&:' numpy/lib/tests/test_io.py || die + + distutils-r1_python_prepare_all +} + +python_compile() { + export MAKEOPTS=-j1 #660754 + + local python_makeopts_jobs="" + python_is_python3 || python_makeopts_jobs="-j $(makeopts_jobs)" + distutils-r1_python_compile \ + ${python_makeopts_jobs} \ + ${NUMPY_FCONFIG} +} + +python_test() { + distutils_install_for_testing --single-version-externally-managed \ + --record "${TMPDIR}/record.txt" ${NUMPY_FCONFIG} + + cd "${TMPDIR}" || die + + "${EPYTHON}" -c " +import numpy, sys +r = numpy.test(label='full', verbose=3) +sys.exit(0 if r else 1)" || die "Tests fail with ${EPYTHON}" +} + +python_install() { + distutils-r1_python_install ${NUMPY_FCONFIG} + python_optimize +} + +python_install_all() { + local DOCS=( THANKS.txt ) + + if use doc; then + local HTML_DOCS=( "${WORKDIR}"/html/. ) + DOCS+=( "${DISTDIR}"/${PN}-{user,ref}-${DOC_PV}.pdf ) + fi + + distutils-r1_python_install_all +} -- 2.26.2