From beb2f43237ee7ef6b1a932ca0b3f8817cf64f01a Mon Sep 17 00:00:00 2001
From: "W. Trevor King" <wking@drexel.edu>
Date: Mon, 15 Mar 2010 09:12:38 -0400
Subject: [PATCH] Renamed "plot-splits" to the more obvious "v-dep"

---
 tex/src/figures/cantilever-data/Makefile      | 22 +++----
 tex/src/figures/cantilever-data/get_v_dep.sh  | 32 ++++++++++
 tex/src/figures/cantilever-data/make_plots.sh | 63 -------------------
 3 files changed, 43 insertions(+), 74 deletions(-)
 create mode 100755 tex/src/figures/cantilever-data/get_v_dep.sh
 delete mode 100755 tex/src/figures/cantilever-data/make_plots.sh

diff --git a/tex/src/figures/cantilever-data/Makefile b/tex/src/figures/cantilever-data/Makefile
index 4a8bea2..646a566 100644
--- a/tex/src/figures/cantilever-data/Makefile
+++ b/tex/src/figures/cantilever-data/Makefile
@@ -3,14 +3,14 @@ ASYPROCESS = ../asy/asyprocess \
   --pretex='\documentclass{drexel-thesis} \input{packages}' \
   --
 
-FIGS = plot-splits loading-rate 
-DATA = 	plot-splits.d/v_dep_131.98.dat \
-	plot-splits.d/v_dep_131.98.fit \
-	plot-splits.d/v_dep_24.33.dat \
-	plot-splits.d/v_dep_24.33.fit \
+FIGS = v-dep loading-rate 
+DATA = 	v-dep.d/v_dep_131.98.dat \
+	v-dep.d/v_dep_131.98.fit \
+	v-dep.d/v_dep_24.33.dat \
+	v-dep.d/v_dep_24.33.fit \
 	loading-rate.d/loading_rate_131.98 \
 	loading-rate.d/loading_rate_24.33
-DATA_DIRS = data plot-splits.d loading-rate.d
+DATA_DIRS = data v-dep.d loading-rate.d
 
 all : $(FIGS:%=%_.tex)
 
@@ -30,20 +30,20 @@ data/raw : extract_f_v_k_data.sh $(DATA_DIRS)
 data/spring-constants data/averaged-data : avg_data.py data/raw
 	python $<
 
-plot-splits.asy plot-splits.gp plot-splits.d/v_dep_%.dat : \
+v-dep.asy v-dep.gp v-dep.d/v_dep_%.dat : \
 		make_plots.sh data/spring-constants data/averaged-data
 	./$<
 
-plot-splits.d/v_dep_%.fit : fit_data.py plot-splits.d/v_dep_%.dat
+v-dep.d/v_dep_%.fit : fit_data.py v-dep.d/v_dep_%.dat
 	python $^ > $@
 
-plot-splits.pdf : plot-splits.gp plot-splits.d/v_dep_*
+v-dep.pdf : v-dep.gp v-dep.d/v_dep_*
 	gnuplot $<
 
-plot-splits.eps : plot-splits.pdf
+v-dep.eps : v-dep.pdf
 	pdftoeps $<
 
-plot-splits-rotated.pdf : plot-splits.pdf
+v-dep-rotated.pdf : v-dep.pdf
 	pdftk $< cat 1E output $@
 
 loading-rate.d/loading_rate_% : get_loading_rates.py avg_data.py data/raw
diff --git a/tex/src/figures/cantilever-data/get_v_dep.sh b/tex/src/figures/cantilever-data/get_v_dep.sh
new file mode 100755
index 0000000..bf6385d
--- /dev/null
+++ b/tex/src/figures/cantilever-data/get_v_dep.sh
@@ -0,0 +1,32 @@
+#!/bin/bash
+
+KFILE='./data/spring-constants'
+AVGFILE='./data/averaged-data'
+ASYSPLIT='./v-dep.asy'
+GPSPLIT='./v-dep.gp'
+
+PLOTS=""
+while read LINE
+do
+    Kprecise=`echo "$LINE" | sed 's/.*= \([0-9.]*\) +.*/\1/'`
+    K=`python -c "print '%.2f' % $Kprecise"`
+    FILE="v-dep.d/v_dep_$K"
+    echo "clearing $FILE"
+    > "$FILE.dat"
+    rm -f "$FILE.fit"
+    PLOTS="$PLOTS, '$FILE.dat' using 1:2:(sqrt(\$4)) with points pt 6 pointsize variable t '$K (pN/nm)'"
+    PLOTS="$PLOTS, '$FILE.fit' using 1:2 with lines notitle"
+done < <(tac "$KFILE")
+PLOTS="${PLOTS:2}" # remove leading ' ,'
+
+while read DATA
+do
+    V=`echo "$DATA" | awk '{print $1}'`
+    K=`echo "$DATA" | awk '{print $2}'`
+    F=`echo "$DATA" | awk '{print $3}'`
+    Fstd=`echo "$DATA" | awk '{print $4}'`
+    N=`echo "$DATA" | awk '{print $5}'`
+    FILE="v-dep.d/v_dep_$K"
+    echo "adding $V, $F, $Fstd, $N to $FILE.dat"
+    echo -e "$V\t$F\t$Fstd\t$N" >> "$FILE.dat"
+done < <(cat "$AVGFILE" | grep -v '^#')
diff --git a/tex/src/figures/cantilever-data/make_plots.sh b/tex/src/figures/cantilever-data/make_plots.sh
deleted file mode 100755
index 081dae6..0000000
--- a/tex/src/figures/cantilever-data/make_plots.sh
+++ /dev/null
@@ -1,63 +0,0 @@
-#!/bin/bash
-
-KFILE='./data/spring-constants'
-AVGFILE='./data/averaged-data'
-ASYSPLIT='./plot-splits.asy'
-GPSPLIT='./plot-splits.gp'
-
-PLOTS=""
-while read LINE
-do
-    Kprecise=`echo "$LINE" | sed 's/.*= \([0-9.]*\) +.*/\1/'`
-    K=`python -c "print '%.2f' % $Kprecise"`
-    FILE="plot-splits.d/v_dep_$K"
-    echo "clearing $FILE"
-    > "$FILE.dat"
-    rm -f "$FILE.fit"
-    PLOTS="$PLOTS, '$FILE.dat' using 1:2:(sqrt(\$4)) with points pt 6 pointsize variable t '$K (pN/nm)'"
-    PLOTS="$PLOTS, '$FILE.fit' using 1:2 with lines notitle"
-done < <(tac "$KFILE")
-PLOTS="${PLOTS:2}" # remove leading ' ,'
-
-while read DATA
-do
-    V=`echo "$DATA" | awk '{print $1}'`
-    K=`echo "$DATA" | awk '{print $2}'`
-    F=`echo "$DATA" | awk '{print $3}'`
-    Fstd=`echo "$DATA" | awk '{print $4}'`
-    N=`echo "$DATA" | awk '{print $5}'`
-    FILE="plot-splits.d/v_dep_$K"
-    echo "adding $V, $F, $Fstd, $N to $FILE.dat"
-    echo -e "$V\t$F\t$Fstd\t$N" >> "$FILE.dat"
-done < <(cat "$AVGFILE" | grep -v '^#')
-
-cat > "$ASYSPLIT" <<HEREDOC
-import wtk_graph;
-
-size(15cm,10cm,IgnoreAspect);
-
-scale(Log, Linear);
-real xscale=1;
-real yscale=1;
-
-graphFile("loading-rate.d/loading_rate_131.98", xscale, yscale, phard, m8,
-          t=units("131.98","pN/nm"), dots=true);
-graphFile("loading-rate.d/loading_rate_24.33", xscale, yscale, red, m8,
-          t=units("24.33","pN/nm"), dots=true);
-
-xlimits(1,3e3);
-ylimits(90,620);
-
-label(sLabel("Loading rate dependence"), point(N),N);
-xaxis(sLabel("Loading rate (pN/s)"),BottomTop,LeftTicks);
-yaxis(sLabel("Unfolding force (pN)"),LeftRight,RightTicks);
-
-add(legend(),point(E),20E,UnFill);
-HEREDOC
-
-cat > "GPSPLIT" <<HEREDOC
-set xlabel 'Pulling speed (nm/s)'
-set ylabel 'Unfolding force (pN)'
-set logscale x;
-plot $PLOTS
-HEREDOC
-- 
2.26.2