From bd2bdba72057544b1b051fb3b1aae1088bc0ec09 Mon Sep 17 00:00:00 2001 From: Olivier Fisette Date: Thu, 23 Dec 2004 21:42:14 +0000 Subject: [PATCH] Moving to sci-biology/seaview --- app-sci/seaview/ChangeLog | 29 ------------------- app-sci/seaview/Manifest | 5 ---- app-sci/seaview/files/29seaview | 1 - app-sci/seaview/files/digest-seaview-1-r1 | 1 - app-sci/seaview/metadata.xml | 16 ----------- app-sci/seaview/seaview-1-r1.ebuild | 35 ----------------------- 6 files changed, 87 deletions(-) delete mode 100644 app-sci/seaview/ChangeLog delete mode 100644 app-sci/seaview/Manifest delete mode 100644 app-sci/seaview/files/29seaview delete mode 100644 app-sci/seaview/files/digest-seaview-1-r1 delete mode 100644 app-sci/seaview/metadata.xml delete mode 100644 app-sci/seaview/seaview-1-r1.ebuild diff --git a/app-sci/seaview/ChangeLog b/app-sci/seaview/ChangeLog deleted file mode 100644 index 384b303b78ce..000000000000 --- a/app-sci/seaview/ChangeLog +++ /dev/null @@ -1,29 +0,0 @@ -# ChangeLog for app-sci/seaview -# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/app-sci/seaview/ChangeLog,v 1.6 2004/11/22 19:38:18 sekretarz Exp $ - - 22 Nov 2004; Karol Wojtaszek seaview-1-r1.ebuild: - Added to ~amd64, bug #72078 - - 31 Oct 2004; Olivier Fisette seaview-1-r1.ebuild: - Added to x86. - -*seaview-1 (24 Jun 2004) - - 24 Jun 2004; Olivier Fisette - seaview-1-r1.ebuild, metedata.xml: - Added app-sci/clustalw as a mandatory dependency. - Set maintainer (ribosome). - -*seaview-1 (24 Jun 2004) - - 24 Jun 2004; David Holm seaview-1.ebuild: - Added to ~ppc. - -*seaview-1 (23 Jun 2004) - - 23 Jun 2004; Olivier Fisette - seaview-1.ebuild, metadata.xml, files/29seaview : - Initial import. Ebuild submitted by Olivier Fisette . - Reference: Gentoo Bugzilla, bug #54055 - diff --git a/app-sci/seaview/Manifest b/app-sci/seaview/Manifest deleted file mode 100644 index 0dad7588f900..000000000000 --- a/app-sci/seaview/Manifest +++ /dev/null @@ -1,5 +0,0 @@ -MD5 8d176cb069d21ce4a4cac1fc2fb727f9 ChangeLog 959 -MD5 1a46ccdd45f25abe962e4f46d7c7ee7d seaview-1-r1.ebuild 916 -MD5 7b87a6c33de5295e356b67218bd4fba9 metadata.xml 614 -MD5 81acca7fe3c919d7be4ef27307d9ce7d files/29seaview 26 -MD5 ee3d2374f6b28744f1b282577c0dcb38 files/digest-seaview-1-r1 56 diff --git a/app-sci/seaview/files/29seaview b/app-sci/seaview/files/29seaview deleted file mode 100644 index 64f2831dcaee..000000000000 --- a/app-sci/seaview/files/29seaview +++ /dev/null @@ -1 +0,0 @@ -PATH="/usr/share/seaview" diff --git a/app-sci/seaview/files/digest-seaview-1-r1 b/app-sci/seaview/files/digest-seaview-1-r1 deleted file mode 100644 index 1b50df5638af..000000000000 --- a/app-sci/seaview/files/digest-seaview-1-r1 +++ /dev/null @@ -1 +0,0 @@ -MD5 48db16486992fed35dad053fed0734e0 seaview.tar 560640 diff --git a/app-sci/seaview/metadata.xml b/app-sci/seaview/metadata.xml deleted file mode 100644 index 29c4ec7801fc..000000000000 --- a/app-sci/seaview/metadata.xml +++ /dev/null @@ -1,16 +0,0 @@ - - - - sci - - ribosome@gentoo.org - Olivier Fisette - - - SeaView is a graphical multiple sequence alignment editor developped by - Manolo Gouy. SeaView is able to read and write various alignment - formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE). It allows to - manually edit the alignment, and also to run DOT-PLOT or CLUSTALW - programs to locally improve the alignment. - - diff --git a/app-sci/seaview/seaview-1-r1.ebuild b/app-sci/seaview/seaview-1-r1.ebuild deleted file mode 100644 index 203cd5d17921..000000000000 --- a/app-sci/seaview/seaview-1-r1.ebuild +++ /dev/null @@ -1,35 +0,0 @@ -# Copyright 1999-2004 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/app-sci/seaview/seaview-1-r1.ebuild,v 1.5 2004/12/23 18:58:39 ribosome Exp $ - -DESCRIPTION="A graphical multiple sequence alignment editor" -HOMEPAGE="http://pbil.univ-lyon1.fr/software/${PN}.html" -SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/${PN}/${PN}.tar" -LICENSE="public-domain" - -SLOT="0" -KEYWORDS="x86 ~ppc ~amd64" -IUSE="" - -DEPEND="x11-libs/fltk - sci-biology/clustalw" - -S=${WORKDIR} - -src_compile() { - # Corrects location of libfltk. - CFLAGS="${CFLAGS} -c -I/usr/include/fltk-1.1" - sed -ie 's:-L$(FLTK)/lib:-L/usr/lib/fltk-1.1:' Makefile - - emake -e || die -} - -src_install() { - dobin seaview seaview_align.sh - insinto /usr/share/${PN} - doins protein.mase seaview.help - - # Sets the path for the package's help file. - insinto /etc/env.d - doins ${FILESDIR}/29seaview -} -- 2.26.2