From b476f1b96e41ae961cbb5a75969af12046d0514d Mon Sep 17 00:00:00 2001
From: Olivier Fisette <ribosome@gentoo.org>
Date: Thu, 23 Dec 2004 21:32:58 +0000
Subject: [PATCH] Moved from app-sci/njplot-unrooted to
 sci-biology/njplot-unrooted.

---
 sci-biology/njplot-unrooted/ChangeLog         | 16 +++++++++
 sci-biology/njplot-unrooted/Manifest          |  4 +++
 .../files/digest-njplot-unrooted-1            |  1 +
 sci-biology/njplot-unrooted/metadata.xml      | 16 +++++++++
 .../njplot-unrooted/njplot-unrooted-1.ebuild  | 35 +++++++++++++++++++
 5 files changed, 72 insertions(+)
 create mode 100644 sci-biology/njplot-unrooted/ChangeLog
 create mode 100644 sci-biology/njplot-unrooted/Manifest
 create mode 100644 sci-biology/njplot-unrooted/files/digest-njplot-unrooted-1
 create mode 100644 sci-biology/njplot-unrooted/metadata.xml
 create mode 100644 sci-biology/njplot-unrooted/njplot-unrooted-1.ebuild

diff --git a/sci-biology/njplot-unrooted/ChangeLog b/sci-biology/njplot-unrooted/ChangeLog
new file mode 100644
index 000000000000..34506f4dc219
--- /dev/null
+++ b/sci-biology/njplot-unrooted/ChangeLog
@@ -0,0 +1,16 @@
+# ChangeLog for app-sci/njplot-unrooted
+# Copyright 1999-2004 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/njplot-unrooted/ChangeLog,v 1.1 2004/12/23 21:32:58 ribosome Exp $
+
+*njplot-unrooted-1 (23 Dec 2004)
+
+  23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +njplot-unrooted-1.ebuild:
+  Moved from app-sci/njplot-unrooted to sci-biology/njplot-unrooted.
+
+*njplot-unrooted-1 (06 Oct 2004)
+
+  06 Oct 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +njplot-unrooted-1.ebuild:
+  Initial import.
+
diff --git a/sci-biology/njplot-unrooted/Manifest b/sci-biology/njplot-unrooted/Manifest
new file mode 100644
index 000000000000..f7709b40c016
--- /dev/null
+++ b/sci-biology/njplot-unrooted/Manifest
@@ -0,0 +1,4 @@
+MD5 e008ff5fb2cd09c2b556bc15d87bd11f njplot-unrooted-1.ebuild 806
+MD5 ea36700cc487ee7217bda9b7d72925d1 ChangeLog 371
+MD5 a1727bd238aff0cb1debdf9b11b21b5e metadata.xml 609
+MD5 72fe56f3a4074cf7324d469c568a242a files/digest-njplot-unrooted-1 69
diff --git a/sci-biology/njplot-unrooted/files/digest-njplot-unrooted-1 b/sci-biology/njplot-unrooted/files/digest-njplot-unrooted-1
new file mode 100644
index 000000000000..5d1ded51f641
--- /dev/null
+++ b/sci-biology/njplot-unrooted/files/digest-njplot-unrooted-1
@@ -0,0 +1 @@
+MD5 bd8228dbc78ab5858154063517d4b6e1 njplot-unrooted-1.tar.bz2 34352
diff --git a/sci-biology/njplot-unrooted/metadata.xml b/sci-biology/njplot-unrooted/metadata.xml
new file mode 100644
index 000000000000..b0cf95961f50
--- /dev/null
+++ b/sci-biology/njplot-unrooted/metadata.xml
@@ -0,0 +1,16 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>ribosome@gentoo.org</email>
+		<name>Olivier Fisette</name>
+	</maintainer>
+	<herd>sci</herd>
+	<longdescription>
+		NJplot is a tree drawing program able to draw any phylogenetic tree
+		expressed in the Newick phylogenetic tree format (e.g., the format used
+		by the PHYLIP package). NJplot is especially convenient for rooting the
+		unrooted trees obtained from parsimony, distance or maximum likelihood
+		tree-building methods.
+	</longdescription>
+</pkgmetadata>
diff --git a/sci-biology/njplot-unrooted/njplot-unrooted-1.ebuild b/sci-biology/njplot-unrooted/njplot-unrooted-1.ebuild
new file mode 100644
index 000000000000..933bac0ced7f
--- /dev/null
+++ b/sci-biology/njplot-unrooted/njplot-unrooted-1.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/njplot-unrooted/njplot-unrooted-1.ebuild,v 1.1 2004/12/23 21:32:58 ribosome Exp $
+
+DESCRIPTION="A phylogenetic tree drawing program which supports tree rooting"
+HOMEPAGE="http://pbil.univ-lyon1.fr/software/njplot.html"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+LICENSE="public-domain"
+
+SLOT="0"
+KEYWORDS="~x86"
+IUSE=""
+
+DEPEND="sci-biology/ncbi-tools
+	virtual/x11"
+
+src_unpack() {
+	unpack ${A}
+	cd ${S}
+	sed -i -e "s%njplot.help%/usr/share/doc/${PF}/njplot.help%" njplot-vib.c
+}
+
+src_compile() {
+	make -e || die
+}
+
+src_install() {
+	dobin newicktops njplot unrooted
+
+	insinto /usr/share/doc/${PF}
+	doins njplot.help
+
+	insinto /usr/share/${PN}
+	doins test.ph
+}
-- 
2.26.2