From ac72ace1a79bea4ed4fd1f19e48076f564d6087e Mon Sep 17 00:00:00 2001 From: "W. Trevor King" Date: Fri, 5 Nov 2010 14:31:53 -0400 Subject: [PATCH] No need to give an explicit K in the pysawsim constant-rate analysis. --- pysawsim/test/constant_rate.py | 10 +++------- 1 file changed, 3 insertions(+), 7 deletions(-) diff --git a/pysawsim/test/constant_rate.py b/pysawsim/test/constant_rate.py index 3bf7556..55d0656 100644 --- a/pysawsim/test/constant_rate.py +++ b/pysawsim/test/constant_rate.py @@ -23,7 +23,7 @@ With the constant velocity experiment and a Hookian domain, the unfolding force is proportional to time, so we expect exponential population decay, even with multiple unfolding domains. -For example, with a spring constant +Analytically, with a spring constant .. math:: k = df/dx @@ -39,14 +39,10 @@ so .. math:: f = kvt + f_0 \;. -With an unfolding rate constant - -.. math:: K = 1 \text{frac/s} - -The population follows +With an unfolding rate constant :math:`K`, the population follows .. math:: - dp/dt = Kp = 1 \text{s^{-1}} + dp/dt = Kp p(t) = exp(-tK) = exp(-(f-f_0)K/kv) = p(f) \;. Therefore, a histogram of unfolding vs. force :math:`p(f)` normalized -- 2.26.2