From a25ae8eb3d1372bd2b9202c8808ed410e6a6ca46 Mon Sep 17 00:00:00 2001
From: "fabrizio.benedetti.82" <devnull@localhost>
Date: Fri, 5 Mar 2010 11:44:09 +0000
Subject: [PATCH] A correction on autopeak.py due to the add of curvetools.py
 (a self. was missing)

---
 autopeak.py |  4 ++--
 fit.py      |  3 +--
 hooke.py    | 15 +++++++++------
 pcluster.py | 29 +++--------------------------
 4 files changed, 15 insertions(+), 36 deletions(-)

diff --git a/autopeak.py b/autopeak.py
index 49f2646..c6f5ee5 100644
--- a/autopeak.py
+++ b/autopeak.py
@@ -131,11 +131,11 @@ class autopeakCommands:
         #--Contact point arguments
         if 'reclick' in args.split():
             print 'Click contact point'
-            contact_point, contact_point_index = pickup_contact_point()
+            contact_point, contact_point_index = self.pickup_contact_point()
         elif 'noauto' in args.split():
             if self.wlccontact_index==None or self.wlccurrent != self.current.path:
                 print 'Click contact point'
-                contact_point , contact_point_index = pickup_contact_point()
+                contact_point , contact_point_index = self.pickup_contact_point()
             else:
                 contact_point=self.wlccontact_point
                 contact_point_index=self.wlccontact_index
diff --git a/fit.py b/fit.py
index b883ef1..f18ea73 100755
--- a/fit.py
+++ b/fit.py
@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+# -*- coding: utf-8 -*-
 
 '''
 FIT
@@ -49,8 +50,6 @@ class fitCommands:
         '''
     
         #STEP 1: Prepare the vectors to apply the fit.
-        
-        
         if pl_value is not None:
             pl_value=pl_value/(10**9)
         
diff --git a/hooke.py b/hooke.py
index 6bceecb..6a8a921 100755
--- a/hooke.py
+++ b/hooke.py
@@ -688,12 +688,15 @@ class MainWindow(wx.Frame):
             '''
         if dest==None:
             dest=self.current_plot_dest
-
-        plot=None
-        for aplot in self.plots:
-            if aplot.destination == dest:
-                plot=aplot
-        return plot
+        try:
+          plot=None
+          for aplot in self.plots:
+              if aplot.destination == dest:
+                  plot=aplot
+          return plot
+        except:
+           print "No curve available"
+           return None
 
     def _replot(self):
         '''
diff --git a/pcluster.py b/pcluster.py
index 5084b83..2ab469d 100644
--- a/pcluster.py
+++ b/pcluster.py
@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+# -*- coding: utf-8 -*-
 
 from mdp import pca
 from libhooke import WX_GOOD, ClickedPoint
@@ -76,30 +77,6 @@ class pclusterCommands:
         f.write('; Peak number  ;  1 peak Length (nm) ; 1 peak Force (pN) ;  2 peak Length (nm) ; 2 peak Force (pN) ;  3 peak Length (nm) ; 3 peak Force (pN) ;  4 peak Length (nm) ; 4 peak Force (pN) ;  5 peak Length (nm) ; 5 peak Force (pN) ;  6 peak Length (nm) ; 6 peak Force (pN) ;  7 peak Length (nm) ; 7 peak Force (pN) ;  8 peak Length (nm) ; 8 peak Force (pN)\n')
         f.close()
         
-        # ------ FUNCTION ------
-        def fit_interval_nm(start_index,plot,nm,backwards):
-            '''
-            Calculates the number of points to fit, given a fit interval in nm
-            start_index: index of point
-            plot: plot to use
-            backwards: if true, finds a point backwards.
-            '''
-            whatset=1 #FIXME: should be decidable
-            x_vect=plot.vectors[1][0]
-            
-            c=0
-            i=start_index
-            start=x_vect[start_index]
-            maxlen=len(x_vect)
-            while abs(x_vect[i]-x_vect[start_index])*(10**9) < nm:
-                if i==0 or i==maxlen-1: #we reached boundaries of vector!
-                    return c
-                if backwards:
-                    i-=1
-                else:
-                    i+=1
-                c+=1
-            return c
 
         def plot_informations(itplot,pl_value):
             '''
@@ -118,9 +95,9 @@ class pclusterCommands:
             cindex=self.find_contact_point(itplot[0]) #Automatically find contact point <158, libhooke.ClickedPoint>
             contact_point=self._clickize(itplot[0].vectors[1][0], itplot[0].vectors[1][1], cindex)
             self.basepoints=[]
-            base_index_0=peak_location[-1]+fit_interval_nm(peak_location[-1], itplot[0], self.config['auto_right_baseline'],False)
+            base_index_0=peak_location[-1]+self.fit_interval_nm(peak_location[-1], itplot[0], self.config['auto_right_baseline'],False)
             self.basepoints.append(self._clickize(itplot[0].vectors[1][0],itplot[0].vectors[1][1],base_index_0))
-            base_index_1=self.basepoints[0].index+fit_interval_nm(self.basepoints[0].index, itplot[0], self.config['auto_left_baseline'],False)
+            base_index_1=self.basepoints[0].index+self.fit_interval_nm(self.basepoints[0].index, itplot[0], self.config['auto_left_baseline'],False)
             self.basepoints.append(self._clickize(itplot[0].vectors[1][0],itplot[0].vectors[1][1],base_index_1))
             self.basecurrent=self.current.path
             boundaries=[self.basepoints[0].index, self.basepoints[1].index]
-- 
2.26.2