From 98ed52cf2901229132e9a8cf01700d12358e5450 Mon Sep 17 00:00:00 2001 From: "W. Trevor King" Date: Thu, 25 Feb 2010 10:01:00 -0500 Subject: [PATCH] Pull out cantilever peak index simulation figure. --- tex/src/cantilever/simulations.tex | 37 +++++-------------- tex/src/figures/cantilever-data/Makefile | 2 +- tex/src/figures/cantilever-data/i-dep.asy | 22 +++++++++++ .../cantilever-data/{v_dep.asy => v-dep.asy} | 12 +++--- .../{v_dep.d => v-dep.d}/v_dep_0.1_1 | 0 .../{v_dep.d => v-dep.d}/v_dep_0.1_30 | 0 .../{v_dep.d => v-dep.d}/v_dep_127_30 | 0 .../{v_dep.d => v-dep.d}/v_dep_127_8 | 0 .../{v_dep.d => v-dep.d}/v_dep_27_30 | 0 .../{v_dep.d => v-dep.d}/v_dep_27_8 | 0 10 files changed, 39 insertions(+), 34 deletions(-) create mode 100644 tex/src/figures/cantilever-data/i-dep.asy rename tex/src/figures/cantilever-data/{v_dep.asy => v-dep.asy} (61%) rename tex/src/figures/cantilever-data/{v_dep.d => v-dep.d}/v_dep_0.1_1 (100%) rename tex/src/figures/cantilever-data/{v_dep.d => v-dep.d}/v_dep_0.1_30 (100%) rename tex/src/figures/cantilever-data/{v_dep.d => v-dep.d}/v_dep_127_30 (100%) rename tex/src/figures/cantilever-data/{v_dep.d => v-dep.d}/v_dep_127_8 (100%) rename tex/src/figures/cantilever-data/{v_dep.d => v-dep.d}/v_dep_27_30 (100%) rename tex/src/figures/cantilever-data/{v_dep.d => v-dep.d}/v_dep_27_8 (100%) diff --git a/tex/src/cantilever/simulations.tex b/tex/src/cantilever/simulations.tex index 82f1359..931f155 100644 --- a/tex/src/cantilever/simulations.tex +++ b/tex/src/cantilever/simulations.tex @@ -8,39 +8,22 @@ combination with our \sawsim Monte Carlo simulator yielded the following results: \begin{figure} - \asyfig{figures/cantilever-data/v_dep} - \caption{Unfolding force velocity dependence for different cantilevers.} + \asyfig{figures/cantilever-data/v-dep} + \caption{Unfolding force velocity dependence for different cantilevers.\label{fig:v-dep:cant}} \end{figure} \begin{figure} \asyfig{figures/cantilever-data/loading-rate-sim} + \caption{Unfolding force loading rate dependence simulations for + different cantilevers.} +\end{figure} + +\begin{figure} + \asyfig{figures/cantilever-data/i-dep} + \caption{Unfolding force peak index dependence simulations for + different cantilevers.} \end{figure} -%\begin{figure} -%\begin{asy} -%size(6cm,4cm,IgnoreAspect); -%scale(Linear, Linear); -%real xscale=1; -%real yscale=1e12; -% -%graphFile("cantilever/i_dep_127_8_1e-6", xscale, yscale, phard, m8, t=units("127","pN/nm")+", 8 domains"); -%graphFile("cantilever/i_dep_27_8_1e-6", xscale, yscale, pmed, m8, t=units("27","pN/nm")+", 8 domains"); -%graphFile("cantilever/i_dep_127_30_1e-6", xscale, yscale, phard, m30, t=units("127","pN/nm")+", 30 domains"); -%graphFile("cantilever/i_dep_27_30_1e-6", xscale, yscale, pmed, m30, t=units("27","pN/nm")+", 30 domains"); -%graphFile("cantilever/i_dep_0.1_1_1e-6", xscale, yscale, psoft, m1, t=units("0.1","pN/nm")+", 1 domain"); -%graphFile("cantilever/i_dep_0.1_30_1e-6", xscale, yscale, psoft, m30, t=units("0.1","pN/nm")+", 30 domains"); -% -%//xlimits(1,10); -%ylimits(140,320); -% -%label(sLabel("Peak index dependence ("+units("1.0","$\mu$m/s")+")"), point(N),N); -%xaxis(sLabel("Peak index"),BottomTop,LeftTicks); -%yaxis(sLabel("Unfolding force (pN)"),LeftRight,RightTicks); -% -%add(legend(),point(E),20E,UnFill); -%\end{asy} -%\end{figure} -% %\begin{figure} %\begin{asy} %size(6cm,4cm,IgnoreAspect); diff --git a/tex/src/figures/cantilever-data/Makefile b/tex/src/figures/cantilever-data/Makefile index 186c20d..30e11c1 100644 --- a/tex/src/figures/cantilever-data/Makefile +++ b/tex/src/figures/cantilever-data/Makefile @@ -6,7 +6,7 @@ ASYPROCESS = ../asy/asyprocess \ all : loading-rate_.tex sim-loading-rate_.tex v_dep_.tex clean : - rm -f loading-rate{_,-}* sim-loading-rate{_,-}* v_dep{_,-}* + rm -f loading-rate{_,-}* sim-loading-rate{_,-}* v-dep{_,-}* %_.tex : %.asy $(ASYPROCESS) $(patsubst %.asy, %, $<) diff --git a/tex/src/figures/cantilever-data/i-dep.asy b/tex/src/figures/cantilever-data/i-dep.asy new file mode 100644 index 0000000..caaf177 --- /dev/null +++ b/tex/src/figures/cantilever-data/i-dep.asy @@ -0,0 +1,22 @@ +import wtk_graph; + +size(15cm,10cm,IgnoreAspect); +scale(Linear, Linear); +real xscale=1; +real yscale=1e12; + +graphFile("i-dep.d/i_dep_127_8_1e-6", xscale, yscale, phard, m8, t=units("127","pN/nm")+", 8 domains"); +graphFile("i-dep.d/i_dep_27_8_1e-6", xscale, yscale, pmed, m8, t=units("27","pN/nm")+", 8 domains"); +graphFile("i-dep.d/i_dep_127_30_1e-6", xscale, yscale, phard, m30, t=units("127","pN/nm")+", 30 domains"); +graphFile("i-dep.d/i_dep_27_30_1e-6", xscale, yscale, pmed, m30, t=units("27","pN/nm")+", 30 domains"); +graphFile("i-dep.d/i_dep_0.1_1_1e-6", xscale, yscale, psoft, m1, t=units("0.1","pN/nm")+", 1 domain"); +graphFile("i-dep.d/i_dep_0.1_30_1e-6", xscale, yscale, psoft, m30, t=units("0.1","pN/nm")+", 30 domains"); + +//xlimits(1,10); +ylimits(140,320); + +label(sLabel("Peak index dependence ("+units("1.0","$\mu$m/s")+")"), point(N),N); +xaxis(sLabel("Peak index"),BottomTop,LeftTicks); +yaxis(sLabel("Unfolding force (pN)"),LeftRight,RightTicks); + +add(legend(),point(E),20E,UnFill); diff --git a/tex/src/figures/cantilever-data/v_dep.asy b/tex/src/figures/cantilever-data/v-dep.asy similarity index 61% rename from tex/src/figures/cantilever-data/v_dep.asy rename to tex/src/figures/cantilever-data/v-dep.asy index 8f514a3..056e477 100644 --- a/tex/src/figures/cantilever-data/v_dep.asy +++ b/tex/src/figures/cantilever-data/v-dep.asy @@ -4,12 +4,12 @@ size(15cm,10cm,IgnoreAspect); scale(Log, Linear); real xscale=1e6; real yscale=1e12; -graphFile("v_dep.d/v_dep_127_8", xscale, yscale, p=phard, mpath=m8, t=units("127","pN/nm")+", 8 domains"); -graphFile("v_dep.d/v_dep_27_8", xscale, yscale, p=pmed, mpath=m8, t=units("27","pN/nm")+", 8 domains"); -graphFile("v_dep.d/v_dep_127_30", xscale, yscale, p=phard, mpath=m30, t=units("127","pN/nm")+", 30 domains"); -graphFile("v_dep.d/v_dep_27_30", xscale, yscale, p=pmed, mpath=m30, t=units("27","pN/nm")+", 30 domains"); -graphFile("v_dep.d/v_dep_0.1_1", xscale, yscale, p=psoft, mpath=m1, t=units("0.1","pN/nm")+", 1 domain"); -graphFile("v_dep.d/v_dep_0.1_30", xscale, yscale, p=psoft, mpath=m30, t=units("0.1","pN/nm")+", 30 domains"); +graphFile("v-dep.d/v_dep_127_8", xscale, yscale, p=phard, mpath=m8, t=units("127","pN/nm")+", 8 domains"); +graphFile("v-dep.d/v_dep_27_8", xscale, yscale, p=pmed, mpath=m8, t=units("27","pN/nm")+", 8 domains"); +graphFile("v-dep.d/v_dep_127_30", xscale, yscale, p=phard, mpath=m30, t=units("127","pN/nm")+", 30 domains"); +graphFile("v-dep.d/v_dep_27_30", xscale, yscale, p=pmed, mpath=m30, t=units("27","pN/nm")+", 30 domains"); +graphFile("v-dep.d/v_dep_0.1_1", xscale, yscale, p=psoft, mpath=m1, t=units("0.1","pN/nm")+", 1 domain"); +graphFile("v-dep.d/v_dep_0.1_30", xscale, yscale, p=psoft, mpath=m30, t=units("0.1","pN/nm")+", 30 domains"); //xlimits(1,10); ylimits(150,340); diff --git a/tex/src/figures/cantilever-data/v_dep.d/v_dep_0.1_1 b/tex/src/figures/cantilever-data/v-dep.d/v_dep_0.1_1 similarity index 100% rename from tex/src/figures/cantilever-data/v_dep.d/v_dep_0.1_1 rename to tex/src/figures/cantilever-data/v-dep.d/v_dep_0.1_1 diff --git a/tex/src/figures/cantilever-data/v_dep.d/v_dep_0.1_30 b/tex/src/figures/cantilever-data/v-dep.d/v_dep_0.1_30 similarity index 100% rename from tex/src/figures/cantilever-data/v_dep.d/v_dep_0.1_30 rename to tex/src/figures/cantilever-data/v-dep.d/v_dep_0.1_30 diff --git a/tex/src/figures/cantilever-data/v_dep.d/v_dep_127_30 b/tex/src/figures/cantilever-data/v-dep.d/v_dep_127_30 similarity index 100% rename from tex/src/figures/cantilever-data/v_dep.d/v_dep_127_30 rename to tex/src/figures/cantilever-data/v-dep.d/v_dep_127_30 diff --git a/tex/src/figures/cantilever-data/v_dep.d/v_dep_127_8 b/tex/src/figures/cantilever-data/v-dep.d/v_dep_127_8 similarity index 100% rename from tex/src/figures/cantilever-data/v_dep.d/v_dep_127_8 rename to tex/src/figures/cantilever-data/v-dep.d/v_dep_127_8 diff --git a/tex/src/figures/cantilever-data/v_dep.d/v_dep_27_30 b/tex/src/figures/cantilever-data/v-dep.d/v_dep_27_30 similarity index 100% rename from tex/src/figures/cantilever-data/v_dep.d/v_dep_27_30 rename to tex/src/figures/cantilever-data/v-dep.d/v_dep_27_30 diff --git a/tex/src/figures/cantilever-data/v_dep.d/v_dep_27_8 b/tex/src/figures/cantilever-data/v-dep.d/v_dep_27_8 similarity index 100% rename from tex/src/figures/cantilever-data/v_dep.d/v_dep_27_8 rename to tex/src/figures/cantilever-data/v-dep.d/v_dep_27_8 -- 2.26.2