From 782c963764eed4c84c307e057cb55dd164eab8fb Mon Sep 17 00:00:00 2001 From: "W. Trevor King" Date: Sat, 16 Oct 2010 12:28:41 -0400 Subject: [PATCH] Consolidated ...X macros and abbreviated journal/publisher macros in sawsim.bib. --- src/sawsim.bib | 252 +++++++++++++++++++++++-------------------------- 1 file changed, 119 insertions(+), 133 deletions(-) diff --git a/src/sawsim.bib b/src/sawsim.bib index fd2ed82..70f60f5 100644 --- a/src/sawsim.bib +++ b/src/sawsim.bib @@ -3,11 +3,11 @@ @string{DAbramavicius = "Abramavicius, Darius"} @string{SRKAinavarapu = "Ainavarapu, Sri Rama Koti"} @string{MDAllen = "Allen, Mark D."} -@string{AmericanJournalofPhysics = "American Journal of Physics"} -@string{AmericanPhysicalSociety = "American Physical Society"} +@string{AJP = "American Journal of Physics"} +@string{APS = "American Physical Society"} @string{IAndricioaei = "Andricioaei, Ioan"} @string{DAnselmetti = "Anselmetti, D."} -@string{AppliedMathematicsandComputation = "Applied Mathematics and Computation"} +@string{AMC = "Applied Mathematics and Computation"} @string{SArcidiacono = "Arcidiacono, S."} @string{CRArciola = "Arciola, Carla Renata"} @string{WABaase = "Baase, Walter A."} @@ -33,8 +33,7 @@ @string{KSBillings = "Billings, Kate S."} @string{Biochemistry = "Biochemistry"} @string{BiophysJ = "Biophys J"} -@string{BiophysJX = "Biophys. J."} -@string{BiophysicalSocietyAnnualMeetingPoster = "Biophysical Society Annual Meeting (Poster)"} +@string{BPS:P = "Biophysical Society Annual Meeting (Poster)"} @string{JABirchler = "Birchler, James A."} @string{AWBlake = "Blake, Anthony W."} @string{MBooth = "Booth, Michael"} @@ -48,10 +47,9 @@ @string{VBrumfeld = "Brumfeld, Vlad"} @string{JDBryngelson = "Bryngelson, J. D."} @string{BBullard = "Bullard, Belinda"} -@string{CBustamanteX = "Bustamante, C."} @string{CBustamante = "Bustamante, Carlos"} @string{YBustanji = "Bustanji, Yasser"} -@string{CambridgeUniversityPress = "Cambridge University Press"} +@string{CUP = "Cambridge University Press"} @string{IDCampbell = "Campbell, Iain D."} @string{YCao = "Cao, Yi"} @string{PCarl = "Carl, Philippe"} @@ -74,18 +72,16 @@ @string{RIDima = "Dima, Ruxandra I."} @string{DEDischer = "Discher, Dennis E."} @string{LDougan = "Dougan, Lorna"} -@string{OKDudko = "Dudko, O. K."} -@string{OKDudkoX = "Dudko, Olga K."} +@string{OKDudko = "Dudko, Olga K."} @string{EMBORep = "EMBO Rep"} @string{REckel = "Eckel, R."} @string{MElbaum = "Elbaum, Michael"} -@string{ElsevierNorth-HollandPersonalLibrary = "Elsevier, North-Holland Personal Library"} +@string{E:NHPL = "Elsevier, North-Holland Personal Library"} @string{TEndo = "Endo, Toshiya"} @string{HPErickson = "Erickson, Harold P."} @string{MEsaki = "Esaki, Masatoshi"} @string{EEvans = "Evans, E."} @string{MEvstigneev = "Evstigneev, M."} -@string{JMFernandezX = "Fernandez, J. M."} @string{JMFernandez = "Fernandez, Julio M."} @string{AEFilippov = "Filippov, A. E."} @string{BFlannery = "Flannery, B."} @@ -108,8 +104,7 @@ @string{HGranzier = "Granzier, Henk"} @string{FGrater = "Grater, Frauke"} @string{CGrossman = "Grossman, C."} -@string{HGrubmuller = {Grubm{\"u}ller, H.}} -@string{HGrubmullerX = {Grubm{\"u}ller, Helmut}} +@string{HGrubmuller = {Grubm{\"u}ller, Helmut}} @string{HJGuntherodt = "Guntherodt, Hans-Joachim"} @string{PHanggi = {H\"anggi, Peter}} @string{JAHaack = "Haack, Julie A."} @@ -131,8 +126,7 @@ @string{GHummer = "Hummer, Gerhard"} @string{WLHung = "Hung, Wen-Liang"} @string{JLHutter = "Hutter, Jeffrey L."} -@string{CHyeon = "Hyeon, C."} -@string{CHyeonX = "Hyeon, Changbong"} +@string{CHyeon = "Hyeon, Changbong"} @string{AIrback = "Irback, Anders"} @string{SIzrailev = "Izrailev, S."} @string{JBiotechnol = "J Biotechnol"} @@ -140,7 +134,7 @@ @string{JTheorBiol = "J Theor Biol"} @string{JChemPhys = "J. Chem. Phys."} @string{LJanosi = "Janosi, Lorant"} -@string{JapaneseJournalofAppliedPhysics = "Japanese Journal of Applied Physics"} +@string{JJAP = "Japanese Journal of Applied Physics"} @string{YJia = "Jia, Yiwei"} @string{SJiang = "Jiang, Shaoyi"} @string{CPJohnson = "Johnson, Colin P."} @@ -155,8 +149,7 @@ @string{WTKing = "King, W. Trevor"} @string{JKlafter = "Klafter, J."} @string{AKleiner = "Kleiner, Ariel"} -@string{DKKlimov = "Klimov, D. K."} -@string{DKKlimovX = "Klimov, Dmitri K."} +@string{DKKlimov = "Klimov, Dmitri K."} @string{IKosztin = "Kosztin, Ioan"} @string{HAKramers = "Kramers, H.A."} @string{AKrammer = "Krammer, Andre"} @@ -191,7 +184,6 @@ @string{RMamdani = "Mamdani, Reneeta"} @string{EMandello = "Mandello, Enrico"} @string{GManderson = "Manderson, Gavin"} -@string{JFMarkoX = "Marko, J. F."} @string{JFMarko = "Marko, John F."} @string{PEMarszalek = "Marszalek, Piotr E."} @string{JMathe = "Math{\'e}, J{\'e}r{\^o}me"} @@ -210,12 +202,12 @@ @string{VMontana = "Montana, Vedrana"} @string{LMontanaro = "Montanaro, Lucio"} @string{SMukamel = "Mukamel, Shaul"} -@string{NatStructBiol = "Nat Struct Biol"} -@string{NatStructMolBiol = "Nat Struct Mol Biol"} +@string{NSB = "Nat Struct Biol"} +@string{NSMB = "Nat Struct Mol Biol"} @string{CNeagoe = "Neagoe, Ciprian"} @string{NetworkTheoryLtd = "Network Theory Ltd."} @string{RNevo = "Nevo, Reinat"} -@string{NewJournalofPhysics = "New Journal of Physics"} +@string{NJP = "New Journal of Physics"} @string{SPNg = "Ng, Sean P."} @string{MNguyen-Duong = "Nguyen-Duong, M."} @string{SNie = "Nie, S."} @@ -233,24 +225,21 @@ @string{CAOpitz = "Opitz, Christiane A."} @string{KOroszlan = "Oroszlan, Krisztina"} @string{EOroudjev = "Oroudjev, E."} -@string{OxfordUniversityPress = "Oxford University Press"} +@string{OUP = "Oxford University Press"} @string{EPaci = "Paci, Emanuele"} @string{VParpura = "Parpura, Vladimir"} @string{QPeng = "Peng, Qing"} @string{OPerisic = "Perisic, Ognjen"} @string{CLPeterson = "Peterson, Craig L."} @string{PPeterson = "Peterson, Pearu"} -@string{PhilosophicalTransactionsoftheRoyalSocietyofLondon = "Philosophical Transactions of the Royal Society of London"} -@string{PhysRevLett = "Phys Rev Lett"} -@string{PhysRevE = "Phys. Rev. E"} -@string{PhysRevLettX = "Phys. Rev. Lett."} +@string{PTRSL = "Philosophical Transactions of the Royal Society of London"} +@string{PRL = "Phys Rev Lett"} +@string{PRE = "Phys. Rev. E"} @string{Physica = "Physica"} @string{CPickett = "Pickett, Chris"} @string{WPress = "Press, W."} -@string{ProcNatlAcadSciUSA = "Proc Natl Acad Sci U S A"} -@string{PNAS = "Proc. Nat. Acad. Sci."} -@string{ProceedingsoftheNationalAcademyofSciences = "Proceedings of the National Academy of Sciences"} -@string{ProteinSci = "Protein Sci"} +@string{PNAS = "Proceedings of the National Academy of Sciences U.S.A"} +@string{ProtSci = "Protein Sci"} @string{Proteins = "Proteins"} @string{SRQuake = "Quake, Stephen R."} @string{SERadford = "Radford, Sheena E."} @@ -260,9 +249,8 @@ @string{SDRedick = "Redick, Sambra D."} @string{ZReich = "Reich, Ziv"} @string{PReimann = "Reimann, P."} -@string{RevModPhys = "Rev. Mod. Phys."} -@string{RSI = "Rev. Sci. Instrum."} -@string{ReviewofScientificInstruments = "Review of Scientific Instruments"} +@string{RMP = "Rev. Mod. Phys."} +@string{RSI = "Review of Scientific Instruments"} @string{FRief = "Rief, Frederick"} @string{MRief = "Rief, Matthias"} @string{KRitchie = "Ritchie, K."} @@ -279,8 +267,7 @@ @string{NFScherer = "Scherer, Norbert F."} @string{MSchleicher = "Schleicher, Michael"} @string{MSchlierf = "Schlierf, Michael"} -@string{KSchulten = "Schulten, K."} -@string{KSchultenX = "Schulten, Klaus"} +@string{KSchulten = "Schulten, Klaus"} @string{ZSchulten = "Schulten, Zan"} @string{ISchwaiger = "Schwaiger, Ingo"} @string{Science = "Science"} @@ -290,7 +277,6 @@ @string{DSharma = "Sharma, Deepak"} @string{YJSheng = "Sheng, Yu-Jane"} @string{JShillcock = "Shillcock, Julian"} -@string{EDSiggiaX = "Siggia, E. D."} @string{EDSiggia = "Siggia, Eric D."} @string{CLSmith = "Smith, Corey L."} @string{DASmith = "Smith, D. Alastair"} @@ -307,8 +293,8 @@ @string{PTalkner = "Talkner, Peter"} @string{JTang = "Tang, Jianyong"} @string{STeukolsky = "Teukolsky, S."} -@string{TheJournalofChemicalPhysics = "The Journal of Chemical Physics"} -@string{TheRoyalSociety = "The Royal Society"} +@string{JCP = "The Journal of Chemical Physics"} +@string{RS = "The Royal Society"} @string{JTheiler = "Theiler, James"} @string{DThirumalai = "Thirumalai, D."} @string{JBThompson = "Thompson, J. B."} @@ -384,7 +370,7 @@ Fibronectin extension and unfolding within cell matrix fibrils controlled by cytoskeletal tension}", year = 2002, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 99, number = 8, pages = "5139--5143", @@ -420,10 +406,10 @@ } @article { basche01, - author = {TBasche #" and "# SNie #" and "# JMFernandezX}, + author = {TBasche #" and "# SNie #" and "# JMFernandez}, title = "{Single molecules}", year = 2001, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 98, number = 19, pages = "10527--10528", @@ -438,7 +424,7 @@ laboratory", collaboration = "", year = 2002, - journal = AmericanJournalofPhysics, + journal = AJP, volume = 70, number = 4, pages = "393--400", @@ -494,7 +480,7 @@ title = "{A simple method for probing the mechanical unfolding pathway of proteins in detail}", year = 2002, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 99, number = 19, pages = "12143--12148", @@ -596,7 +582,7 @@ title = "{From the Cover: Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA}", year = 2002, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 99, number = 4, pages = "1960--1965", @@ -621,7 +607,7 @@ title = "Spin glasses and the statistical mechanics of protein folding.", year = 1987, month = nov, - journal = ProcNatlAcadSciUSA, + journal = PNAS, volume = 84, number = 21, pages = "7524--7528", @@ -687,7 +673,7 @@ title = "{The molecular elasticity of the insect flight muscle proteins projectin and kettin}", year = 2006, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 103, number = 12, pages = "4451--4456", @@ -715,7 +701,7 @@ } @article { bustamante94, - author = {CBustamanteX #" and "# JFMarkoX #" and "# EDSiggiaX #" and "# + author = {CBustamante #" and "# JFMarko #" and "# EDSiggia #" and "# SSmith}, title = "Entropic elasticity of lambda-phage {DNA}.", year = 1994, @@ -737,7 +723,7 @@ title = "{Dynamics of the interaction between a fibronectin molecule and a living bacterium under mechanical force}", year = 2003, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 100, number = 23, pages = "13292--13297", @@ -776,7 +762,7 @@ title = "{A functional single-molecule binding assay via force spectroscopy}", year = 2007, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 104, number = 40, pages = "15677--15681", @@ -817,7 +803,7 @@ title = "{Forced unfolding modulated by disulfide bonds in the Ig domains of a cell adhesion molecule}", year = 2001, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 98, number = 4, pages = "1565--1570", @@ -836,7 +822,7 @@ year = 1999, month = mar, day = 30, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 96, number = 7, pages = "3694--3699", @@ -853,7 +839,7 @@ year = 1999, month = sep, day = 28, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 96, number = 20, pages = "11288--11292", @@ -867,18 +853,18 @@ author = "GCowan", title = "Statistical Data Analysis", year = 1998, - publisher = OxfordUniversityPress, + publisher = OUP, address = "New York", note = "Noise deconvolution in Chapter 11", project = "Cantilever Calibration" } @article { craig01, - author = {DCraig #" and "# AKrammer #" and "# KSchultenX #" and "# VVogel}, + author = {DCraig #" and "# AKrammer #" and "# KSchulten #" and "# VVogel}, title = "{Comparison of the early stages of forced unfolding for fibronectin type III modules}", year = 2001, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 98, number = 10, pages = "5590--5595", @@ -893,7 +879,7 @@ title = "{Exploring the energy landscape of GFP by single-molecule mechanical experiments}", year = 2004, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 101, number = 46, pages = "16192--16197", @@ -930,7 +916,7 @@ author = {HDietz #" and "# FBerkemeier #" and "# MBertz #" and "# MRief}, title = "{Anisotropic deformation response of single protein molecules}", year = 2006, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 103, number = 34, pages = "12724--12728", @@ -959,7 +945,7 @@ author = {HDietz #" and "# MRief}, title = "{Protein structure by mechanical triangulation}", year = 2006, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 103, number = 5, pages = "1244--1247", @@ -985,7 +971,7 @@ title = "Detecting Molecular Fingerprints in Single Molecule Force Spectroscopy Using Pattern Recognition", year = 2007, - journal = JapaneseJournalofAppliedPhysics, + journal = JJAP, volume = 46, number = "8B", pages = "5540--5542", @@ -1011,7 +997,7 @@ author = {DEDischer #" and "# NBhasin #" and "# CPJohnson}, title = "{Covalent chemistry on distended proteins}", year = 2006, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 103, number = 20, pages = "7533--7534", @@ -1028,7 +1014,7 @@ year = 2003, month = sep, day = 30, - journal = ProcNatlAcadSciUSA, + journal = PNAS, volume = 100, number = 20, pages = "11378--11381", @@ -1052,13 +1038,13 @@ } @article { dudko06, - author = {OKDudkoX #" and "# GHummer #" and "# ASzabo}, + author = {OKDudko #" and "# GHummer #" and "# ASzabo}, title = "Intrinsic rates and activation free energies from single-molecule pulling experiments.", year = 2006, month = mar, day = 17, - journal = PhysRevLett, + journal = PRL, volume = 96, number = 10, pages = 108101, @@ -1082,7 +1068,7 @@ } @article { dudko07, - author = {OKDudkoX #" and "# JMathe #" and "# ASzabo #" and "# AMeller #" + author = {OKDudko #" and "# JMathe #" and "# ASzabo #" and "# AMeller #" and "# GHummer}, title = "Extracting kinetics from single-molecule force spectroscopy: nanopore unzipping of {DNA} hairpins.", @@ -1240,11 +1226,11 @@ @article { gao03, author = {MGao #" and "# DCraig #" and "# OLequin #" and "# IDCampbell #" - and "# VVogel #" and "# KSchultenX}, + and "# VVogel #" and "# KSchulten}, title = "{Structure and functional significance of mechanically unfolded fibronectin type III1 intermediates}", year = 2003, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 100, number = 25, pages = "14784--14789", @@ -1320,7 +1306,7 @@ title = "{Unbinding process of adsorbed proteins under external stress studied by atomic force microscopy spectroscopy}", year = 2000, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 97, number = 20, pages = "10802--10807", @@ -1335,12 +1321,12 @@ Mortality, and on a New Mode of Determining the Value of Life Contingencies", year = 1825, - journal = PhilosophicalTransactionsoftheRoyalSocietyofLondon, + journal = PTRSL, volume = 115, number = "", pages = "513--583", issn = 02610523, - publisher = TheRoyalSociety, + publisher = RS, copyright = "Copyright \copy 1825 The Royal Society", url = "http://www.jstor.org/stable/107756", abstract = "" @@ -1369,12 +1355,12 @@ title = "Reaction-rate theory: fifty years after Kramers", year = 1990, month = "Apr", - journal = RevModPhys, + journal = RMP, volume = 62, number = 2, pages = "251--341", numpages = 90, - publisher = AmericanPhysicalSociety, + publisher = APS, doi = "10.1103/RevModPhys.62.251", eprint = "http://www.physik.uni-augsburg.de/theo1/hanggi/Papers/112.pdf", url = "http://prola.aps.org/abstract/RMP/v62/i2/p251_1", @@ -1388,12 +1374,12 @@ title = "Dynamic Properties of an Extended Polymer in Solution", year = 1999, month = "Apr", - journal = PhysRevLettX, + journal = PRL, volume = 82, number = 17, pages = "3548--3551", numpages = 3, - publisher = AmericanPhysicalSociety, + publisher = APS, doi = "10.1103/PhysRevLett.82.3548", url = "http://link.aps.org/abstract/PRL/v82/p3548", note = "Defines WLC and FJC models, citing textbooks.", @@ -1406,7 +1392,7 @@ year = 2000, month = jun, day = 26, - journal = PhysRevLett, + journal = PRL, volume = 84, number = "26 Pt 1", pages = "6126--6129", @@ -1432,7 +1418,7 @@ title = "{From the Cover: Free energy reconstruction from nonequilibrium single-molecule pulling experiments}", year = 2001, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 98, number = 7, pages = "3658--3661", @@ -1484,7 +1470,7 @@ title = "Calibration of atomic-force microscope tips", collaboration = "", year = 1993, - journal = ReviewofScientificInstruments, + journal = RSI, volume = 64, number = 7, pages = "1868--1873", @@ -1498,13 +1484,13 @@ } @article { hyeon03, - author = {CHyeonX #" and "# DThirumalai}, + author = {CHyeon #" and "# DThirumalai}, title = "Can energy landscape roughness of proteins and {RNA} be measured by using mechanical unfolding experiments?", year = 2003, month = sep, day = 02, - journal = ProcNatlAcadSciUSA, + journal = PNAS, volume = 100, number = 18, pages = "10249--10253", @@ -1534,7 +1520,7 @@ author = {AIrback #" and "# SMitternacht #" and "# SMohanty}, title = "{Dissecting the mechanical unfolding of ubiquitin}", year = 2005, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 102, number = 38, pages = "13427--13432", @@ -1641,7 +1627,7 @@ year = 2009, month = mar, day = 01, - journal = BiophysicalSocietyAnnualMeetingPoster + journal = BPS:P } @article { kleiner07, @@ -1687,7 +1673,7 @@ year = 2000, month = jun, day = 20, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 97, number = 13, pages = "7254--7259", @@ -1765,7 +1751,7 @@ author = {KKroy #" and "# JGlaser}, title = "The glassy wormlike chain", year = 2007, - journal = NewJournalofPhysics, + journal = NJP, volume = 9, number = 11, pages = 416, @@ -1795,7 +1781,7 @@ title = "Calcium-dependent molecular spring elements in the giant protein titin", year = 2003, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 100, number = 23, pages = "13716--13721", @@ -1824,7 +1810,7 @@ title = "{Atomic force microscopy reveals the mechanical design of a modular protein}", year = 2000, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 97, number = 12, pages = "6527--6531", @@ -1840,7 +1826,7 @@ title = "{Multiple conformations of PEVK proteins detected by single- molecule techniques}", year = 2001, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 98, number = 19, pages = "10682--10686", @@ -1867,11 +1853,11 @@ } @article { li06, - author = {MSLi #" and "# CKHu #" and "# DKKlimovX #" and "# DThirumalai}, + author = {MSLi #" and "# CKHu #" and "# DKKlimov #" and "# DThirumalai}, title = "{Multiple stepwise refolding of immunoglobulin domain I27 upon force quench depends on initial conditions}", year = 2006, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 103, number = 1, pages = "93--98", @@ -1906,7 +1892,7 @@ #" and "# VParpura}, title = "{Botulinum toxin type B micromechanosensor}", year = 2003, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 100, number = 23, pages = "13621--13625", @@ -1937,7 +1923,7 @@ title = "Kinetic Monte Carlo simulation of titin unfolding", collaboration = "", year = 2001, - journal = TheJournalofChemicalPhysics, + journal = JCP, volume = 114, number = 21, pages = "9663--9673", @@ -1976,7 +1962,7 @@ title = "{Chair-boat transitions in single polysaccharide molecules observed with force-ramp AFM}", year = 2002, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 99, number = 7, pages = "4278--4283", @@ -2013,7 +1999,7 @@ year = 2004, month = sep, day = 28, - journal = ProcNatlAcadSciUSA, + journal = PNAS, volume = 101, number = 39, pages = "14102--14107", @@ -2042,12 +2028,12 @@ } @article { mickler07, - author = {MMickler #" and "# RIDima #" and "# HDietz #" and "# CHyeonX #" + author = {MMickler #" and "# RIDima #" and "# HDietz #" and "# CHyeon #" and "# DThirumalai #" and "# MRief}, title = "Revealing the bifurcation in the unfolding pathways of {GFP} by using single-molecule experiments and simulations", year = 2007, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 104, number = 51, pages = "20268--20273", @@ -2093,7 +2079,7 @@ the complex of Ran and importin beta1.", year = 2003, month = jul, - journal = NatStructBiol, + journal = NSB, volume = 10, number = 7, pages = "553--557", @@ -2196,7 +2182,7 @@ title = "{Designing an extracellular matrix protein with enhanced mechanical stability}", year = 2007, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 104, number = 23, pages = "9633--9637", @@ -2233,7 +2219,7 @@ year = 2007, month = dec, day = 26, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 104, number = 52, pages = "20799--20804", @@ -2276,7 +2262,7 @@ title = "{Exact Low-Force Kinetics from High-Force Single-Molecule Unfolding Events}", year = 2007, - journal = BiophysJX, + journal = BiophysJ, volume = 93, number = 10, pages = "3373-3381", @@ -2311,7 +2297,7 @@ title = "{Stepwise unfolding of titin under force-clamp atomic force microscopy}", year = 2001, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 98, number = 2, pages = "468--472", @@ -2405,7 +2391,7 @@ title = "{Damped elastic recoil of the titin spring in myofibrils of human myocardium}", year = 2003, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 100, number = 22, pages = "12688--12693", @@ -2448,7 +2434,7 @@ title = "{Segmented nanofibers of spider dragline silk: Atomic force microscopy and single-molecule force spectroscopy}", year = 2002, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 99, number = 90002, pages = "6460--6465", @@ -2484,7 +2470,7 @@ title = "{Unfolding proteins by external forces and temperature: The importance of topology and energetics}", year = 2000, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 97, number = 12, pages = "6521--6526", @@ -2499,7 +2485,7 @@ pathways of T4 lysozyme: Evidence for a kinetic partitioning mechanism}", year = 2008, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 105, number = 6, pages = "1885--1890", @@ -2539,7 +2525,7 @@ title = "Numerical Recipies in {C}: The Art of Scientific Computing", year = 1992, edition = 2, - publisher = CambridgeUniversityPress, + publisher = CUP, address = "New York", eprint = "http://www.nrbook.com/a/bookcpdf.php", note = "See sections 12.0, 12.1, 12.3, and 13.4 for a good introduction to @@ -2606,7 +2592,7 @@ } @article { rief02, - author = {MRief #" and "# HGrubmullerX}, + author = {MRief #" and "# HGrubmuller}, title = "Force spectroscopy of single biomolecules.", year = 2002, month = mar, @@ -2672,12 +2658,12 @@ Extensibility", year = 1998, month = nov, - journal = PhysRevLettX, + journal = PRL, volume = 81, number = 21, pages = "4764--4767", numpages = 3, - publisher = AmericanPhysicalSociety, + publisher = APS, doi = "10.1103/PhysRevLett.81.4764", eprint = "http://prola.aps.org/pdf/PRL/v81/i21/p4764_1" } @@ -2687,7 +2673,7 @@ title = "{Simultaneous atomic force microscope and fluorescence measurements of protein unfolding using a calibrated evanescent wave}", year = 2004, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 101, number = 35, pages = "12882--12886", @@ -2713,7 +2699,7 @@ title = "{Comparison of the protein-unfolding pathways between mitochondrial protein import and atomic-force microscopy measurements}", year = 2005, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 102, number = 50, pages = "17999--18004", @@ -2741,7 +2727,7 @@ title = "{The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques}", year = 2004, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 101, number = 19, pages = "7299--7304", @@ -2817,7 +2803,7 @@ year = 2004, month = jan, day = 29, - journal = NatStructMolBiol, + journal = NSMB, volume = 11, number = 1, pages = "81--85", @@ -2893,7 +2879,7 @@ title = "{Single-molecule force spectroscopy reveals a mechanically stable protein fold and the rational tuning of its mechanical stability}", year = 2007, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 104, number = 22, pages = "9278--9283", @@ -2933,7 +2919,7 @@ title = "Forced Kramers escape in single-molecule pulling experiments", collaboration = "", year = 2005, - journal = TheJournalofChemicalPhysics, + journal = JCP, volume = 123, number = 9, pages = 091102, @@ -2952,12 +2938,12 @@ title = "Escape from a metastable well under a time-ramped force", year = 1998, month = "Jun", - journal = PhysRevE, + journal = PRE, volume = 57, number = 6, pages = "7301--7304", numpages = 3, - publisher = AmericanPhysicalSociety, + publisher = APS, doi = "10.1103/PhysRevE.57.7301", eprint = "http://prola.aps.org/pdf/PRE/v57/i6/p7301_1", url = "http://link.aps.org/abstract/PRE/v57/p7301", @@ -2970,7 +2956,7 @@ funnels", collaboration = "", year = 1996, - journal = TheJournalofChemicalPhysics, + journal = JCP, volume = 104, number = 15, pages = "5860-5868", @@ -2998,7 +2984,7 @@ HJGuntherodt}, title = "{Dynamic force spectroscopy of single DNA molecules}", year = 1999, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 96, number = 20, pages = "11277--11282", @@ -3058,11 +3044,11 @@ } @article { szabo80, - author = {ASzabo #" and "# KSchultenX #" and "# ZSchulten}, + author = {ASzabo #" and "# KSchulten #" and "# ZSchulten}, title = "First passage time approach to diffusion controlled reactions", collaboration = "", year = 1980, - journal = TheJournalofChemicalPhysics, + journal = JCP, volume = 72, number = 8, pages = "4350-4357", @@ -3079,7 +3065,7 @@ title = "{Dynamics and folding of single two-stranded coiled-coil peptides studied by fluorescent energy transfer confocal microscopy}", year = 2000, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 97, number = 24, pages = "13021--13026", @@ -3133,12 +3119,12 @@ title = "Optical Gradient Forces of Strongly Localized Fields", year = 1998, month = aug, - journal = PhysRevLettX, + journal = PRL, volume = 81, number = 8, pages = "1738--1741", numpages = 3, - publisher = AmericanPhysicalSociety, + publisher = APS, doi = "10.1103/PhysRevLett.81.1738", eprint = "http://prola.aps.org/pdf/PRL/v81/i8/p1738_1", note = "also at \url{http://nanoscience.bu.edu/papers/p1738_1_Meller.pdf}. @@ -3156,7 +3142,7 @@ title = "Stochastic Processes in Physics and Chemistry", year = 2007, edition = 3, - publisher = ElsevierNorth-HollandPersonalLibrary, + publisher = E:NHPL, address = "Amsterdam", note = "", project = "sawtooth simulation" @@ -3168,7 +3154,7 @@ title = "{Signatures of hydrophobic collapse in extended proteins captured with force spectroscopy}", year = 2007, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 104, number = 19, pages = "7916--7921", @@ -3242,7 +3228,7 @@ title = "{From the Cover: Force-dependent chemical kinetics of disulfide bond reduction observed with single-molecule techniques}", year = 2006, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 103, number = 19, pages = "7222--7227", @@ -3286,7 +3272,7 @@ AMatouschek}, title = "{Effect of protein structure on mitochondrial import}", year = 2005, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 102, number = 43, pages = "15435--15440", @@ -3321,7 +3307,7 @@ year = 2004, month = oct, day = 25, - journal = AppliedMathematicsandComputation, + journal = AMC, volume = 158, number = 1, pages = "133--147", @@ -3352,7 +3338,7 @@ title = "{Solid-state synthesis and mechanical unfolding of polymers of T4 lysozyme}", year = 2000, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 97, number = 1, pages = "139--144", @@ -3367,7 +3353,7 @@ the atomic force microscope", collaboration = "", year = 2006, - journal = ReviewofScientificInstruments, + journal = RSI, volume = 77, number = 6, pages = 063701, @@ -3386,7 +3372,7 @@ author = {WYu #" and "# JCLamb #" and "# FHan #" and "# JABirchler}, title = "{Telomere-mediated chromosomal truncation in maize}", year = 2006, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 103, number = 46, pages = "17331--17336", @@ -3422,7 +3408,7 @@ title = "{Single-molecule detection of structural changes during Per-Arnt- Sim (PAS) domain activation}", year = 2006, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 103, number = 31, pages = "11561--11566", @@ -3457,7 +3443,7 @@ title = "{Two-dimensional vibrational optical probes for peptide fast folding investigation}", year = 2006, - journal = ProceedingsoftheNationalAcademyofSciences, + journal = PNAS, volume = 103, number = 50, pages = "18934--18938", @@ -3483,7 +3469,7 @@ and the supramolecular scaffold.", year = 2002, month = dec, - journal = ProteinSci, + journal = ProtSci, volume = 11, number = 12, pages = "2759--2765", -- 2.26.2