From 744f0ed10276b72f8ca8204f119e915cecf57979 Mon Sep 17 00:00:00 2001
From: Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
Date: Sat, 5 Jun 2010 21:06:05 +0000
Subject: [PATCH] Version bump. Package-Manager: portage-HEAD/cvs/Linux x86_64

---
 sci-biology/biopython/ChangeLog             |  9 +++-
 sci-biology/biopython/biopython-1.54.ebuild | 56 +++++++++++++++++++++
 2 files changed, 64 insertions(+), 1 deletion(-)
 create mode 100644 sci-biology/biopython/biopython-1.54.ebuild

diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog
index c7525511a4be..9afc0a08c4cf 100644
--- a/sci-biology/biopython/ChangeLog
+++ b/sci-biology/biopython/ChangeLog
@@ -1,6 +1,13 @@
 # ChangeLog for sci-biology/biopython
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.42 2010/02/13 19:10:21 armin76 Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.43 2010/06/05 21:06:05 arfrever Exp $
+
+*biopython-1.54 (05 Jun 2010)
+
+  05 Jun 2010; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
+  -biopython-1.49.ebuild, -files/biopython-1.49-flex.patch,
+  -biopython-1.51.ebuild, -biopython-1.52.ebuild, +biopython-1.54.ebuild:
+  Version bump.
 
   13 Feb 2010; Raúl Porcel <armin76@gentoo.org> biopython-1.53.ebuild:
   alpha/sparc stable wrt #301964
diff --git a/sci-biology/biopython/biopython-1.54.ebuild b/sci-biology/biopython/biopython-1.54.ebuild
new file mode 100644
index 000000000000..f1da59ac98dc
--- /dev/null
+++ b/sci-biology/biopython/biopython-1.54.ebuild
@@ -0,0 +1,56 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.54.ebuild,v 1.1 2010/06/05 21:06:05 arfrever Exp $
+
+EAPI="3"
+PYTHON_DEPEND="2"
+SUPPORT_PYTHON_ABIS="1"
+RESTRICT_PYTHON_ABIS="3.*"
+
+inherit distutils eutils
+
+DESCRIPTION="Biopython - Python modules for computational molecular biology"
+HOMEPAGE="http://www.biopython.org http://pypi.python.org/pypi/biopython"
+SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"
+
+LICENSE="as-is"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~ppc ~sparc ~x86"
+IUSE="mysql postgres"
+
+RDEPEND="dev-python/numpy
+	>=dev-python/reportlab-2.0
+	mysql? ( dev-python/mysql-python )
+	postgres? ( dev-python/psycopg )"
+DEPEND="${RDEPEND}
+	sys-devel/flex"
+
+DISTUTILS_USE_SEPARATE_SOURCE_DIRECTORIES="1"
+DOCS="CONTRIB DEPRECATED NEWS README"
+PYTHON_MODNAME="Bio BioSQL"
+
+src_prepare() {
+	distutils_src_prepare
+	epatch "${FILESDIR}/${PN}-1.51-flex.patch"
+}
+
+src_test() {
+	testing() {
+		cd Tests
+		PYTHONPATH="$(ls -d ../build/lib.*)" "$(PYTHON)" run_tests.py
+	}
+	python_execute_function --nonfatal -s testing
+}
+
+src_install() {
+	distutils_src_install
+
+	dodir "/usr/share/doc/${PF}"
+	cp -r Doc/* "${D}/usr/share/doc/${PF}/" || \
+			die "Failed to install documentation."
+	dodir "/usr/share/${PN}"
+	rm -f Tests/*.pyc || \
+			die "Failed to remove precompiled test files."
+	cp -r --preserve=mode Scripts Tests "${D}/usr/share/${PN}/" || \
+			die "Failed to install shared files."
+}
-- 
2.26.2