From 710752d733f7d636a68d42bc03d4b53e7c0e5a91 Mon Sep 17 00:00:00 2001 From: "W. Trevor King" Date: Tue, 21 May 2013 17:42:53 -0400 Subject: [PATCH] sawsim/methods.tex: Make C and Python references citations This is their first occurence in this section. Mom thinks that some folks may not have heard of C! ;) --- src/local_cmmds.tex | 1 + src/sawsim/methods.tex | 10 ++++++---- 2 files changed, 7 insertions(+), 4 deletions(-) diff --git a/src/local_cmmds.tex b/src/local_cmmds.tex index 4603e88..a8562fd 100644 --- a/src/local_cmmds.tex +++ b/src/local_cmmds.tex @@ -165,6 +165,7 @@ \defcitealias{h5config}{h5config} \defcitealias{hdf5}{HDF5} \defcitealias{interix}{Interix} +\defcitealias{kernighan88}{C} \defcitealias{king10}{sawsim} \defcitealias{labview}{LabVIEW} \defcitealias{picoforce}{PicoForce} diff --git a/src/sawsim/methods.tex b/src/sawsim/methods.tex index 951c327..d513d73 100644 --- a/src/sawsim/methods.tex +++ b/src/sawsim/methods.tex @@ -9,10 +9,12 @@ obtained by balancing the tension in the protein polymer and the Hookean force of the bent cantilever. The unfolding probability of the protein molecules in the polymer is then calculated for that tension, and whether an unfolding event occurs is determined according -to a Monte Carlo method. The simulation was implemented in C, and -there are a number of Python modules to facilitate running several -simulations in parallel\footnote{Source code available at - \url{http://blog.tremily.us/posts/sawsim/}}. +to a Monte Carlo method. The simulation was implemented in +\citetalias{kernighan88}, and there are a number of +\citetalias{python} modules to facilitate running several simulations +in parallel\footnote{ + Source code available at \url{http://blog.tremily.us/posts/sawsim/}. +}. In the following sections, we'll discuss models used to determine the tension of a chain composed of several types of ``domains'' (e.g.~one -- 2.26.2