From 52430a43c781aca0d0ae6f263beeb7c983a80250 Mon Sep 17 00:00:00 2001 From: Olivier Fisette Date: Thu, 23 Dec 2004 22:22:39 +0000 Subject: [PATCH] Moving to sci-biology/generic-genome-browser --- app-sci/generic-genome-browser/ChangeLog | 14 ---- app-sci/generic-genome-browser/Manifest | 4 - .../files/digest-generic-genome-browser-1.58 | 1 - .../generic-genome-browser-1.58.ebuild | 82 ------------------- app-sci/generic-genome-browser/metadata.xml | 6 -- 5 files changed, 107 deletions(-) delete mode 100644 app-sci/generic-genome-browser/ChangeLog delete mode 100644 app-sci/generic-genome-browser/Manifest delete mode 100644 app-sci/generic-genome-browser/files/digest-generic-genome-browser-1.58 delete mode 100644 app-sci/generic-genome-browser/generic-genome-browser-1.58.ebuild delete mode 100644 app-sci/generic-genome-browser/metadata.xml diff --git a/app-sci/generic-genome-browser/ChangeLog b/app-sci/generic-genome-browser/ChangeLog deleted file mode 100644 index b29853db3453..000000000000 --- a/app-sci/generic-genome-browser/ChangeLog +++ /dev/null @@ -1,14 +0,0 @@ -# ChangeLog for app-sci/generic-genome-browser -# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/app-sci/generic-genome-browser/ChangeLog,v 1.3 2004/08/03 11:47:17 dholm Exp $ - - 03 Aug 2004; David Holm - generic-genome-browser-1.58.ebuild: - Added to ~ppc. - -*generic-genome-browser-1.58 (13 Jan 2004) - - 13 Jan 2004; Stephen Diener - generic-genome-browser-1.58.ebuild: - Initial import - diff --git a/app-sci/generic-genome-browser/Manifest b/app-sci/generic-genome-browser/Manifest deleted file mode 100644 index 9b09cd4805b9..000000000000 --- a/app-sci/generic-genome-browser/Manifest +++ /dev/null @@ -1,4 +0,0 @@ -MD5 f8a929c7cd915f81c54fe8902eb31fb0 generic-genome-browser-1.58.ebuild 2045 -MD5 9a5801972704c2ae01eec3d579429ac4 ChangeLog 485 -MD5 e8b4df3df76800c376905734d8043cfa metadata.xml 216 -MD5 a46a3f4a12816bb198f2f532a605ba11 files/digest-generic-genome-browser-1.58 80 diff --git a/app-sci/generic-genome-browser/files/digest-generic-genome-browser-1.58 b/app-sci/generic-genome-browser/files/digest-generic-genome-browser-1.58 deleted file mode 100644 index 7226614fcc54..000000000000 --- a/app-sci/generic-genome-browser/files/digest-generic-genome-browser-1.58 +++ /dev/null @@ -1 +0,0 @@ -MD5 582a53ef6906eea02ecdd7fa3065928e Generic-Genome-Browser-1.58.tar.gz 1207583 diff --git a/app-sci/generic-genome-browser/generic-genome-browser-1.58.ebuild b/app-sci/generic-genome-browser/generic-genome-browser-1.58.ebuild deleted file mode 100644 index 62711f950c6d..000000000000 --- a/app-sci/generic-genome-browser/generic-genome-browser-1.58.ebuild +++ /dev/null @@ -1,82 +0,0 @@ -# Copyright 1999-2004 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/app-sci/generic-genome-browser/generic-genome-browser-1.58.ebuild,v 1.5 2004/12/23 22:22:06 ribosome Exp $ - -inherit perl-module - -CATEGORY="app-sci" - -MY_PN="Generic-Genome-Browser" -MY_P="${MY_PN}-${PV}" - -DESCRIPTION="The generic genome browser provides a display of genomic annotations on interactive web pages" -HOMEPAGE="http://www.gmod.org" -SRC_URI="mirror://sourceforge/gmod/${MY_P}.tar.gz" - -LICENSE="Artistic" -SLOT="0" -KEYWORDS="~x86 ~ppc" -IUSE="mysql gd" - -S="${WORKDIR}/${MY_P}" - -DEPEND=" - >=sci-biology/bioperl-1.4 - >=dev-perl/CGI-2.56 - >=dev-perl/GD-2.07 - dev-perl/DBI - dev-perl/Digest-MD5 - dev-perl/Text-Shellwords - dev-perl/libwww-perl - dev-perl/XML-Parser - dev-perl/XML-Writer - dev-perl/XML-Twig - dev-perl/XML-DOM - dev-perl/Bio-Das - gd? ( - dev-perl/GD-SVG - ) - mysql? - ( - >=dev-db/mysql-4 - dev-perl/DBD-mysql - ) - >=net-www/apache-2.0.47" - -RDEPEND="${DEPEND}" - - -src_compile() { - - cd ${S} -# ewarn "Modifying Makefile.PL to avoid sandbox violation" - sed -e "s:WriteMakefile(:WriteMakefile(\n 'PREFIX'=>'${D}/usr',\n'INSTALLDIRS' => 'vendor',:" -i Makefile.PL - - perl Makefile.PL \ - HTDOCS=/var/www/localhost/htdocs \ - CGIBIN=/var/www/localhost/cgi-bin \ - CONF=/etc \ - PREFIX=/var/www/localhost \ - DESTDIR=${D} \ - INSTALLDIRS=vendor - #perl-module_src_compile || die "Make failed" - perl-module_src_test || die "Test Failed" -} - -src_install() { - dodir /etc - dodir /var/www/localhost/htdocs - dodir /var/www/localhost/cgi-bin - mydoc="History README TODO INSTALL" - dodir /usr/share/${PF}/tutorial - cd ${S}/docs/tutorial - tar cf - ./ | ( cd ${D}/usr/share/${PF}/scripts; tar xf -) - cd ${S} - sed -e "s:my \$dir = \":my \$dir = \"${D}/:" -i install_util/conf_install.PLS - sed -e "s:my \$ht_target = \":my \$ht_target = \"${D}/:" -i install_util/htdocs_install.PLS - sed -e "s:my \$cgi_target = :my \$cgi_target = \"${D}\"\.:" -i install_util/cgi_install.PLS - - perl-module_src_install -} - - diff --git a/app-sci/generic-genome-browser/metadata.xml b/app-sci/generic-genome-browser/metadata.xml deleted file mode 100644 index 8a4bcd47220d..000000000000 --- a/app-sci/generic-genome-browser/metadata.xml +++ /dev/null @@ -1,6 +0,0 @@ - - - -sci -sediener@gentoo.org - -- 2.26.2