From 4923b41b9275450c6da2abee09ce8e966cf11af7 Mon Sep 17 00:00:00 2001 From: "W. Trevor King" Date: Tue, 2 Sep 2008 08:41:18 -0400 Subject: [PATCH] Added a better introduction and UTF-8 capability in sawsim.nw. --- src/sawsim.nw | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) diff --git a/src/sawsim.nw b/src/sawsim.nw index 660adc0..7b9c1f2 100644 --- a/src/sawsim.nw +++ b/src/sawsim.nw @@ -20,6 +20,9 @@ % super selects citations in superscript mode % sort&compress automatically sorts and compresses compound citations (\cite{a,b,...}) +\usepackage[mathletters]{ucs} % use math fonts to allow Greek UTF-8 in the text +\usepackage[utf8x]{inputenc} % allow UTF-8 characters + %\bibliographystyle{ieeetr} % pick the bibliography style, short and sweet %\bibliographystyle{plain} % pick the bibliography style, includes dates \bibliographystyle{plainnat} @@ -79,6 +82,21 @@ simulate this unfolding through an explicit time-stepping approach. We develop a program in \lang\ to simulate probability of unfolding under a constant extension velocity of a chain of globular domains. +In order to extract physical meaning from many mechanical unfolding +simulations, it is necessary to compare the experimental results +against the results of simulations using different models and +parameters. The model and parameters that best match the experimental +data provide the ‘best’ model for that experiment. + +Previous mechanical unfolding studies have rolled their own +simulations for modelling their experiment, and there has been little +exchange and standardization of these simulations between groups. +The \prog\ program attempts to fill this gap, providing a flexible, +extensible, \emph{community} program, to make it easier for groups +to share the burden and increase the transparency of data analysis. + +‘Sawsim’ is blend of ‘sawtooth simulation’. + \subsection{Related work} TODO References @@ -88,6 +106,9 @@ TODO References This document was written in \citetalias{sw:noweb} with code blocks in \lang\ and comment blocks in \LaTeX. +\subsection{System Requirements and Dependencies} + + \subsection{Change Log} Version 0.0 used only the unfolded domain WLC to determine the tension -- 2.26.2