From 46ae02cb50750046dc8efb264beea5338ff44a29 Mon Sep 17 00:00:00 2001 From: "W. Trevor King" Date: Sat, 16 Oct 2010 15:49:46 -0400 Subject: [PATCH] Give root.bib a final run through pybtex. This just re-wrapped some author lines and swapped dietz06{a,b} (now with months and dates to stabilize future sorts). root.bib is now stable against future pybtex passes. --- tex/src/root.bib | 100 ++++++++++++++++++++++++----------------------- 1 file changed, 51 insertions(+), 49 deletions(-) diff --git a/tex/src/root.bib b/tex/src/root.bib index 38c2451..f7bac1c 100644 --- a/tex/src/root.bib +++ b/tex/src/root.bib @@ -1772,8 +1772,8 @@ } @article { carrion-vazquez00, - author = MCarrionVazquez #" and "# AOberhauser #" and "# TEFisher #" and "# PMarszalek #" and "# HLi #" and "# - JFernandez, + author = MCarrionVazquez #" and "# AOberhauser #" and "# TEFisher #" and "# + PMarszalek #" and "# HLi #" and "# JFernandez, title = "Mechanical design of proteins studied by single-molecule force spectroscopy and protein engineering", year = 2000, @@ -1844,7 +1844,8 @@ } @article { carrion-vazquez99a, - author = MCarrionVazquez #" and "# PMarszalek #" and "# AOberhauser #" and "# JFernandez, + author = MCarrionVazquez #" and "# PMarszalek #" and "# AOberhauser #" and + "# JFernandez, title = "Atomic force microscopy captures length phenotypes in single proteins", year = 1999, @@ -2167,6 +2168,33 @@ } @article { dietz06a, + author = HDietz #" and "# MRief, + title = "Protein structure by mechanical triangulation", + year = 2006, + month = jan, + day = 31, + journal = PNAS, + volume = 103, + number = 5, + pages = "1244--1247", + doi = "10.1073/pnas.0509217103", + eprint = "http://www.pnas.org/cgi/reprint/103/5/1244.pdf", + url = "http://www.pnas.org/cgi/content/abstract/103/5/1244", + abstract = "Knowledge of protein structure is essential to understand + protein function. High-resolution protein structure has so far been the + domain of ensemble methods. Here, we develop a simple single-molecule + technique to measure spatial position of selected residues within a + folded and functional protein structure in solution. Construction and + mechanical unfolding of cysteine-engineered polyproteins with + controlled linkage topology allows measuring intramolecular distance + with angstrom precision. We demonstrate the potential of this technique + by determining the position of three residues in the structure of green + fluorescent protein (GFP). Our results perfectly agree with the GFP + crystal structure. Mechanical triangulation can find many applications + where current bulk structural methods fail." +} + +@article { dietz06b, author = HDietz #" and "# FBerkemeier #" and "# MBertz #" and "# MRief, title = "Anisotropic deformation response of single protein molecules", year = 2006, @@ -2197,33 +2225,6 @@ of protein materials." } -@article { dietz06b, - author = HDietz #" and "# MRief, - title = "Protein structure by mechanical triangulation", - year = 2006, - month = jan, - day = 31, - journal = PNAS, - volume = 103, - number = 5, - pages = "1244--1247", - doi = "10.1073/pnas.0509217103", - eprint = "http://www.pnas.org/cgi/reprint/103/5/1244.pdf", - url = "http://www.pnas.org/cgi/content/abstract/103/5/1244", - abstract = "Knowledge of protein structure is essential to understand - protein function. High-resolution protein structure has so far been the - domain of ensemble methods. Here, we develop a simple single-molecule - technique to measure spatial position of selected residues within a - folded and functional protein structure in solution. Construction and - mechanical unfolding of cysteine-engineered polyproteins with - controlled linkage topology allows measuring intramolecular distance - with angstrom precision. We demonstrate the potential of this technique - by determining the position of three residues in the structure of green - fluorescent protein (GFP). Our results perfectly agree with the GFP - crystal structure. Mechanical triangulation can find many applications - where current bulk structural methods fail." -} - @article { dietz07, author = HDietz #" and "# MRief, title = "Detecting Molecular Fingerprints in Single Molecule Force @@ -2361,8 +2362,8 @@ } @article { dudko07, - author = OKDudko #" and "# JMathe #" and "# ASzabo #" and "# AMeller #" - and "# GHummer, + author = OKDudko #" and "# JMathe #" and "# ASzabo #" and "# AMeller #" and + "# GHummer, title = "Extracting kinetics from single-molecule force spectroscopy: nanopore unzipping of {DNA} hairpins", year = 2007, @@ -2708,8 +2709,8 @@ } @article { forde02, - author = NRForde #" and "# DIzhaky #" and "# GRWoodcock #" and "# - GJLWuite #" and "# CBustamante, + author = NRForde #" and "# DIzhaky #" and "# GRWoodcock #" and "# GJLWuite + #" and "# CBustamante, title = "Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli {RNA} polymerase", @@ -3428,8 +3429,8 @@ } @article { jollymore09, - author = AJollymore #" and "# CLethias #" and "# QPeng #" and "# YCao - #" and "# HLi, + author = AJollymore #" and "# CLethias #" and "# QPeng #" and "# YCao #" + and "# HLi, title = "Nanomechanical properties of tenascin-{X} revealed by single- molecule force spectroscopy", year = 2009, @@ -3820,8 +3821,8 @@ } @article { krammer99, - author = AKrammer #" and "# HLu #" and "# BIsralewitz #" and "# - KSchulten #" and "# VVogel, + author = AKrammer #" and "# HLu #" and "# BIsralewitz #" and "# KSchulten + #" and "# VVogel, title = "Forced unfolding of the fibronectin type {III} module reveals a tensile molecular recognition switch", year = 1999, @@ -4280,7 +4281,8 @@ } @article { linke98a, - author = WALinke #" and "# MRStockmeier #" and "# MIvemeyer #" and "# HHosser #" and "# PMundel, + author = WALinke #" and "# MRStockmeier #" and "# MIvemeyer #" and "# + HHosser #" and "# PMundel, title = "Characterizing titin's {I}-band {Ig} domain region as an entropic spring", year = 1998, @@ -4327,8 +4329,8 @@ } @article { linke98b, - author = WALinke #" and "# MIvemeyer #" and "# PMundel #" and "# MRStockmeier #" and "# - BKolmerer, + author = WALinke #" and "# MIvemeyer #" and "# PMundel #" and "# + MRStockmeier #" and "# BKolmerer, title = "Nature of {PEVK}-titin elasticity in skeletal muscle", year = 1998, month = jul, @@ -4427,8 +4429,8 @@ } @article { lu00a, - author = HLu #" and "# AKrammer #" and "# BIsralewitz #" and "# VVogel - #" and "# KSchulten, + author = HLu #" and "# AKrammer #" and "# BIsralewitz #" and "# VVogel #" + and "# KSchulten, title = "Computer modeling of force-induced titin domain unfolding", year = 2000, journal = AdvExpMedBiol, @@ -4505,8 +4507,8 @@ } @article { lu98, - author = HLu #" and "# BIsralewitz #" and "# AKrammer #" and "# VVogel - #" and "# KSchulten, + author = HLu #" and "# BIsralewitz #" and "# AKrammer #" and "# VVogel #" + and "# KSchulten, title = "Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation", year = 1998, @@ -4844,8 +4846,8 @@ } @article { mickler07, - author = MMickler #" and "# RDima #" and "# HDietz #" and "# CHyeon #" and "# DThirumalai #" - and "# MRief, + author = MMickler #" and "# RDima #" and "# HDietz #" and "# CHyeon #" and + "# DThirumalai #" and "# MRief, title = "Revealing the bifurcation in the unfolding pathways of {GFP} by using single-molecule experiments and simulations", year = 2007, @@ -5901,8 +5903,8 @@ } @article { schwaiger05, - author = ISchwaiger #" and "# MSchleicher #" and "# - AANoegel #" and "# MRief, + author = ISchwaiger #" and "# MSchleicher #" and "# AANoegel #" and "# + MRief, title = "The folding pathway of a fast-folding immunoglobulin domain revealed by single-molecule mechanical experiments", year = 2005, -- 2.26.2