From 3d2788c05c93845fb2392db0259b13fb01d88156 Mon Sep 17 00:00:00 2001 From: Olivier Fisette Date: Thu, 23 Dec 2004 19:12:37 +0000 Subject: [PATCH] Moving to sci-biology/primer3 --- app-sci/emboss/Manifest | 2 +- app-sci/primer3/ChangeLog | 26 ------------------ app-sci/primer3/Manifest | 4 --- app-sci/primer3/files/digest-primer3-1.0.0 | 1 - app-sci/primer3/metadata.xml | 17 ------------ app-sci/primer3/primer3-1.0.0.ebuild | 32 ---------------------- 6 files changed, 1 insertion(+), 81 deletions(-) delete mode 100644 app-sci/primer3/ChangeLog delete mode 100644 app-sci/primer3/Manifest delete mode 100644 app-sci/primer3/files/digest-primer3-1.0.0 delete mode 100644 app-sci/primer3/metadata.xml delete mode 100644 app-sci/primer3/primer3-1.0.0.ebuild diff --git a/app-sci/emboss/Manifest b/app-sci/emboss/Manifest index e4a5429d276c..525cc323471a 100644 --- a/app-sci/emboss/Manifest +++ b/app-sci/emboss/Manifest @@ -1,4 +1,4 @@ -MD5 da2450ccdcbe5b8f8e0b02f615b62851 emboss-2.9.0.ebuild 1751 +MD5 b80224fa1ee4c546562b1dbbaf0dd73c emboss-2.9.0.ebuild 1755 MD5 1b0826c48804a608a2bb548e7c27dc93 ChangeLog 2789 MD5 6051afb1f26bf343082490327784b958 metadata.xml 1013 MD5 68e42b6377bb0887a0aeac76cf530854 files/digest-emboss-2.9.0 66 diff --git a/app-sci/primer3/ChangeLog b/app-sci/primer3/ChangeLog deleted file mode 100644 index fce4ff8d59e5..000000000000 --- a/app-sci/primer3/ChangeLog +++ /dev/null @@ -1,26 +0,0 @@ -# ChangeLog for app-sci/primer3 -# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/app-sci/primer3/ChangeLog,v 1.5 2004/11/01 01:11:29 ribosome Exp $ - - 31 Oct 2004; Olivier Fisette -primer3-0.9.ebuild, - primer3-1.0.0.ebuild: - Removed old version. Added 1.0 to x86. Fixed regression test. - -*primer3-1.0.0 (10 Aug 2004) - - 10 Aug 2004; Olivier Fisette - primer3-0.9.ebuild: - Added to x86. - primer3-1.0.0.ebuild: - Updated package. Added regression test support. - - 24 Jun 2004; David Holm primer3-0.9.ebuild: - Added to ~ppc. - -*primer3-0.9 (23 Jun 2004) - - 23 Jun 2004; Olivier Fisette - primer3-0.9.ebuild, metadata.xml : - Initial import. Ebuild submitted by Olivier Fisette . - Reference: Gentoo Bugzilla, bug #54036 - diff --git a/app-sci/primer3/Manifest b/app-sci/primer3/Manifest deleted file mode 100644 index 39aea177cf9f..000000000000 --- a/app-sci/primer3/Manifest +++ /dev/null @@ -1,4 +0,0 @@ -MD5 3dfcbfa98dcdf0382e9e6657be56eab3 primer3-1.0.0.ebuild 701 -MD5 8d47023a5fd0eb0143352ba613597cd6 ChangeLog 885 -MD5 a3a36dab6877af45d7b14ec9edea31d9 metadata.xml 713 -MD5 fc13dfb772f9bdd09bc788514faa4abe files/digest-primer3-1.0.0 65 diff --git a/app-sci/primer3/files/digest-primer3-1.0.0 b/app-sci/primer3/files/digest-primer3-1.0.0 deleted file mode 100644 index e6dbc9a3f602..000000000000 --- a/app-sci/primer3/files/digest-primer3-1.0.0 +++ /dev/null @@ -1 +0,0 @@ -MD5 58605ee607f6218a2a775345b10d15fa primer3_1.0.0.tar.gz 936696 diff --git a/app-sci/primer3/metadata.xml b/app-sci/primer3/metadata.xml deleted file mode 100644 index c4e1042f1c19..000000000000 --- a/app-sci/primer3/metadata.xml +++ /dev/null @@ -1,17 +0,0 @@ - - - - - ribosome@gentoo.org - Olivier Fisette - - sci - - Primer3 picks primers for PCR reactions, considering: oligonucleotide - melting temperature, size, GC content, and primer-dimer possibilities; - PCR product size; positional constraints within the source sequence; - and miscellaneous other constraints. All of these criteria are - user-specifiable as constraints, and some are specifiable as terms in - an objective function that characterizes an optimal primer pair. - - diff --git a/app-sci/primer3/primer3-1.0.0.ebuild b/app-sci/primer3/primer3-1.0.0.ebuild deleted file mode 100644 index c0b914687705..000000000000 --- a/app-sci/primer3/primer3-1.0.0.ebuild +++ /dev/null @@ -1,32 +0,0 @@ -# Copyright 1999-2004 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/app-sci/primer3/primer3-1.0.0.ebuild,v 1.2 2004/11/01 01:11:29 ribosome Exp $ - -DESCRIPTION="Design primers for PCR reactions." -HOMEPAGE="http://frodo.wi.mit.edu/primer3/primer3_code.html" -SRC_URI="http://frodo.wi.mit.edu/${PN}/${PN}_${PV}.tar.gz" -LICENSE="whitehead" - -SLOT="0" -KEYWORDS="x86 ~ppc" -IUSE="" - -RDEPEND="" - -DEPEND="dev-lang/perl" - -S=${WORKDIR}/${PN}_${PV}/src - -src_compile() { - emake -e || die -} - -src_test () { - cd ../test - perl primer_test.pl primer3_core || die -} - -src_install () { - dobin primer3_core - dodoc release_notes ../README ../example -} -- 2.26.2