From 1df26eb53666463ffb9f5f41574a9664a2ff7c3f Mon Sep 17 00:00:00 2001 From: Olivier Fisette Date: Wed, 11 Apr 2007 01:15:11 +0000 Subject: [PATCH] New upstream version. Package-Manager: portage-2.1.2.2 --- sci-biology/prosite/ChangeLog | 9 +++- sci-biology/prosite/files/digest-prosite-20.9 | 3 ++ sci-biology/prosite/prosite-20.9.ebuild | 42 +++++++++++++++++++ sci-biology/rebase/ChangeLog | 9 +++- sci-biology/rebase/files/digest-rebase-704 | 3 ++ sci-biology/rebase/rebase-704.ebuild | 42 +++++++++++++++++++ 6 files changed, 104 insertions(+), 4 deletions(-) create mode 100644 sci-biology/prosite/files/digest-prosite-20.9 create mode 100644 sci-biology/prosite/prosite-20.9.ebuild create mode 100644 sci-biology/rebase/files/digest-rebase-704 create mode 100644 sci-biology/rebase/rebase-704.ebuild diff --git a/sci-biology/prosite/ChangeLog b/sci-biology/prosite/ChangeLog index a3fa8706e60a..288200a888f3 100644 --- a/sci-biology/prosite/ChangeLog +++ b/sci-biology/prosite/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/prosite -# Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.94 2006/12/12 20:11:35 ribosome Exp $ +# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.95 2007/04/11 01:13:26 ribosome Exp $ + +*prosite-20.9 (11 Apr 2007) + + 11 Apr 2007; Olivier Fisette +prosite-20.9.ebuild: + New upstream version. *prosite-20.1 (12 Dec 2006) diff --git a/sci-biology/prosite/files/digest-prosite-20.9 b/sci-biology/prosite/files/digest-prosite-20.9 new file mode 100644 index 000000000000..3e8225325be7 --- /dev/null +++ b/sci-biology/prosite/files/digest-prosite-20.9 @@ -0,0 +1,3 @@ +MD5 bdec0ea9bcdad54b0d0fe51387124158 prosite-20.9.tar.bz2 5108913 +RMD160 8e68f488d4112809f54e1d559253c8bbad34ee53 prosite-20.9.tar.bz2 5108913 +SHA256 f00fded0cd67ea29ef0d40f1a1ef16ecb67b717acd7054a903355ad246478e02 prosite-20.9.tar.bz2 5108913 diff --git a/sci-biology/prosite/prosite-20.9.ebuild b/sci-biology/prosite/prosite-20.9.ebuild new file mode 100644 index 000000000000..5c7f80880cc3 --- /dev/null +++ b/sci-biology/prosite/prosite-20.9.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2007 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-20.9.ebuild,v 1.1 2007/04/11 01:13:26 ribosome Exp $ + +DESCRIPTION="A protein families and domains database" +LICENSE="swiss-prot" +HOMEPAGE="http://ca.expasy.org/prosite" +SRC_URI="mirror://gentoo/${P}.tar.bz2" + +SLOT="0" +# Minimal build keeps only the indexed files (if applicable) and the +# documentation. The non-indexed database is not installed. +IUSE="emboss minimal" +KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86" + +DEPEND="emboss? ( >=sci-biology/emboss-3.0.0 )" + +src_compile() { + if use emboss; then + mkdir PROSITE + echo + einfo "Indexing PROSITE for usage with EMBOSS." + EMBOSS_DATA="." prosextract -auto -prositedir "${S}" || die \ + "Indexing PROSITE failed." + echo + fi +} + +src_install() { + if ! use minimal; then + insinto /usr/share/${PN} + doins *.{doc,dat,lis} || die "Installing raw database failed." + fi + dodoc *.txt || die "Documentation installation failed." + dohtml *.htm || die "HTML documentation installation failed." + insinto /usr/share/doc/${PF} + doins *.pdf || die "PDF documentation installation failed." + if use emboss; then + insinto /usr/share/EMBOSS/data/PROSITE + doins PROSITE/* || die "Installing EMBOSS data files failed." + fi +} diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog index a4f274599604..f53ae8f0fd79 100644 --- a/sci-biology/rebase/ChangeLog +++ b/sci-biology/rebase/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/rebase -# Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.81 2006/12/12 20:14:51 ribosome Exp $ +# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.82 2007/04/11 01:15:11 ribosome Exp $ + +*rebase-704 (11 Apr 2007) + + 11 Apr 2007; Olivier Fisette +rebase-704.ebuild: + New upstream version. *rebase-612 (12 Dec 2006) diff --git a/sci-biology/rebase/files/digest-rebase-704 b/sci-biology/rebase/files/digest-rebase-704 new file mode 100644 index 000000000000..271b80e2bcff --- /dev/null +++ b/sci-biology/rebase/files/digest-rebase-704 @@ -0,0 +1,3 @@ +MD5 8a0f890d047b84ceda8f6668aff59537 rebase-704.tar.bz2 184563 +RMD160 5aad3fa03f17bf211d6097e795f81610d9045bc3 rebase-704.tar.bz2 184563 +SHA256 8d9792b315f07a62684962b4af79495b8c12397c49769a023d4ba79e17b851dd rebase-704.tar.bz2 184563 diff --git a/sci-biology/rebase/rebase-704.ebuild b/sci-biology/rebase/rebase-704.ebuild new file mode 100644 index 000000000000..b313ec775813 --- /dev/null +++ b/sci-biology/rebase/rebase-704.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2007 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-704.ebuild,v 1.1 2007/04/11 01:15:11 ribosome Exp $ + +DESCRIPTION="A restriction enzyme database" +LICENSE="public-domain" +HOMEPAGE="http://rebase.neb.com" +SRC_URI="mirror://gentoo/${P}.tar.bz2" + +SLOT="0" +# Minimal build keeps only the indexed files (if applicable) and the +# documentation. The non-indexed database is not installed. +IUSE="emboss minimal" +KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86" + +DEPEND="emboss? ( >=sci-biology/emboss-3.0.0-r1 )" + +src_compile() { + if use emboss; then + echo; einfo "Indexing Rebase for usage with EMBOSS." + mkdir REBASE + EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${PV} \ + -protofile proto.${PV} || die "Indexing Rebase failed." + echo + fi +} + +src_install() { + if ! use minimal; then + insinto /usr/share/${PN} + doins withrefm.${PV} proto.${PV} || die \ + "Failed to install raw database." + fi + newdoc REBASE.DOC README || die "Failed to install documentation." + if use emboss; then + insinto /usr/share/EMBOSS/data/REBASE + doins REBASE/embossre.{enz,ref,sup} || die \ + "Failed to install EMBOSS data files." + insinto /usr/share/EMBOSS/data + doins embossre.equ || die "Failed to install enzyme prototypes file." + fi +} -- 2.26.2