From 0f059b5eb7e03f75705f623dc74e27842540da40 Mon Sep 17 00:00:00 2001 From: David Seifert Date: Sat, 9 Apr 2016 21:58:14 +0200 Subject: [PATCH] sci-biology/samtools: Remove lua dep, fix perl shebangs Package-Manager: portage-2.2.28 --- ...ls-0.1.20-r1.ebuild => samtools-0.1.20-r2.ebuild} | 12 +++++++++++- 1 file changed, 11 insertions(+), 1 deletion(-) rename sci-biology/samtools/{samtools-0.1.20-r1.ebuild => samtools-0.1.20-r2.ebuild} (87%) diff --git a/sci-biology/samtools/samtools-0.1.20-r1.ebuild b/sci-biology/samtools/samtools-0.1.20-r2.ebuild similarity index 87% rename from sci-biology/samtools/samtools-0.1.20-r1.ebuild rename to sci-biology/samtools/samtools-0.1.20-r2.ebuild index 744d15ff5771..e30ed26ca09f 100644 --- a/sci-biology/samtools/samtools-0.1.20-r1.ebuild +++ b/sci-biology/samtools/samtools-0.1.20-r2.ebuild @@ -20,7 +20,6 @@ IUSE="examples" REQUIRED_USE="${PYTHON_REQUIRED_USE}" RDEPEND="sys-libs/ncurses:0= - dev-lang/lua:0 dev-lang/perl" DEPEND="${RDEPEND} virtual/pkgconfig" @@ -50,6 +49,17 @@ src_install() { mv "${ED}"/usr/bin/${PN}-${SLOT}/varfilter{,-${SLOT}}.py || die python_replicate_script "${ED}"/usr/bin/${PN}-${SLOT}/varfilter-${SLOT}.py + # fix perl shebangs + pushd "${ED}"usr/bin/"${PN}-${SLOT}"/ >> /dev/null + local i + for i in plot-bamcheck *.pl; do + sed -e '1s:.*:#!/usr/bin/env perl:' -i "${i}" || die + done + + # remove lua scripts + rm -f r2plot.lua vcfutils.lua || die + popd >> /dev/null + dolib.so libbam-${SLOT}$(get_libname 1) dosym libbam-${SLOT}$(get_libname 1) /usr/$(get_libdir)/libbam-${SLOT}$(get_libname) -- 2.26.2