From 08355dc091135282e5a7151b2685cfbbe1298858 Mon Sep 17 00:00:00 2001
From: "W. Trevor King" <wking@drexel.edu>
Date: Sat, 8 May 2010 06:39:24 -0400
Subject: [PATCH] Converted hooke.plugin.cut to new Plugin architecture.

---
 hooke/plugin/cut.py | 94 +++++++++++++++++++++++----------------------
 1 file changed, 49 insertions(+), 45 deletions(-)

diff --git a/hooke/plugin/cut.py b/hooke/plugin/cut.py
index f2e71cb..ec72efd 100644
--- a/hooke/plugin/cut.py
+++ b/hooke/plugin/cut.py
@@ -1,49 +1,53 @@
 """Defines :class:`CutPlugin` and :class:`CutCommand`.
 """
 
-class cutCommands(object):
-
-    def _plug_init(self):
-        self.cut_basecurrent=None
-        self.cut_basepoints=None
-
-
-
-
-    def do_cut(self,args):
-        '''
-CUT
-        (cut.py)
-        Cut the selected signal between two points.
-        With the first parameter you have to select the signal (for FS for example
-        you can select with "0" the approacing curve and 1 for the retracting
-	curve. This depend also on how many set of data you have on the graph).
-        With the second parameter you select the output name file for the selection.
-	The data is arranged in two simple column without a header, the first column
-	is the "x" data and the second the "y".
-        -----------------
-        Syntax: distance "whatset" "namefile"
-        '''
-        if len(args)==0:
-		print "This command need the number of the graph that you want save and a name for the output file."
-		return
-	
-	a=args.split()
-	
-	
-	whatset=int(a[0])
-	outfile=a[1]
-	plot=self._get_displayed_plot()
-
-        print 'Select two points'
-        points=self._measure_N_points(N=2, whatset=whatset)
-	minbound=min(points[0].index, points[1].index)
-	maxbound=max(points[0].index, points[1].index)
-        boundpoints=[minbound, maxbound]
-	yarr=plot.vectors[whatset][1][boundpoints[0]:boundpoints[1]]
-	xarr=plot.vectors[whatset][0][boundpoints[0]:boundpoints[1]]
-
-	f=open(outfile,'w+')
-	for i in range(len(yarr)):
-		f.write(str(xarr[i])+";"+str(yarr[i])+"\n")
+from . import Plugin, Command, Argument
+
+
+class CutPlugin (Plugin):
+    def __init__(self):
+        super(CutPlugin, self).__init__(name='cut')
+
+    def commands(self):
+        return [CutCommand()]
+
+class CutCommand (Command):
+    def __init__(self):
+        super(CutCommand, self).__init__(
+            name='cut',
+            arguments=[
+                Argument(name='curve', type='curve', optional=False, help="""
+:class:``hooke.Curve`` to cut from.
+""".strip()),
+                Argument(name='block', aliases=['set'], type='int', default=0,
+                    help="""
+Data block to save.  For an approach/retract force curve, `0` selects
+the approacing curve and `1` selects the retracting curve.
+""".strip()),
+                Argument(name='bounds', type='point', optional=False, count=2,
+                         help="""
+Indicies of points bounding the selected data.
+""".strip()),
+                Argument(name='output', type='file', default='cut.dat',
+                         help="""
+File name for the output data.
+""".strip()),
+                ],
+            help="""
+Cut the selected signal between two points and write it to a file.
+
+The data is saved in TAB-delimited ASCII text, where the first column
+is "x" and the second is "y".  There is no header row.
+""".strip())
+
+    def _run(inqueue, outqueue, params):
+	i_min = min([p.index for p in params['points']])
+	i_max = max([p.index for p in params['points']])
+
+	data = params['curve'][params['bound']]
+        cut_data = data[i_min:i_max+1,:] # slice rows from row-major data
+        # +1 to include data[i_max] row
+
+	f = open(params['output'], 'w')
+        cut_data.tofile(f, sep='\t')
         f.close()
-- 
2.26.2