From 01fcc9cdba8d6641c392eff849ecd38bace16034 Mon Sep 17 00:00:00 2001 From: albertogomcas Date: Fri, 12 Mar 2010 06:23:26 +0000 Subject: [PATCH] multifit.py : proper formatting of help section --- multifit.py | 44 ++++++++++++++++++++++++-------------------- 1 file changed, 24 insertions(+), 20 deletions(-) diff --git a/multifit.py b/multifit.py index c617e36..7e7307b 100644 --- a/multifit.py +++ b/multifit.py @@ -36,32 +36,36 @@ class multifitCommands: ''' MULTIFIT (multifit.py) - Presents curves for manual analysis in a comfortable mouse-only fashion. Obtains - contour length, persistance length, rupture force and slope - loading rate. + Presents curves for manual analysis in a comfortable mouse-only fashion. + Obtains contour length, persistance length, rupture force and + slope - loading rate. WLC is shown in red, FJC in blue. ------------- Syntax: - multifit [pl=value] [kl=value] [t=value] [slopew=value] [basew=value] [justone] + multifit [pl=value] [kl=value] [t=value] [slopew=value] [basew=value] + [justone] - pl=[value] and kl=[value]: Use a fixed persistent length (WLC) or Kuhn length (FJC) for - the fit. If pl is not given, the fit will be a 2-variable fit. - DO NOT put spaces between 'pl', '=' and the value. - The value must be in nanometers. - - t=[value] : Use a user-defined temperature. The value must be in kelvins; - by default it is 293 K. - DO NOT put spaces between 't', '=' and the value. - - slopew and basew : width in points for slope fitting (points to the right of clicked rupture) - and base level fitting(points to the left of clicked top of rupture), default is 15. - DO NOT put spaces between 'slopew' or 'basew', '=' and the value. - - justone : performs the fits over current curve instead of iterating + pl=[value] and kl=[value]: Use a fixed persistent length (WLC) or Kuhn + length (FJC) for the fit. If pl is not given, the fit will be + a 2-variable fit. + DO NOT put spaces between 'pl', '=' and the value. + The value must be in nanometers. - see fit command help for more information on the options and fit procedures. + t=[value] : Use a user-defined temperature. The value must be in + kelvins; by default it is 293 K. + DO NOT put spaces between 't', '=' and the value. - NOTE: centerzero plot modifier should be activated (set centerzero 1). - ''' + slopew and basew : width in points for slope fitting (points to the + right of clicked rupture) and base level fitting (points to + the left of clicked top of rupture), default is 15. + DO NOT put spaces between 'slopew' or 'basew', '=' value. + + justone : performs the fits over current curve instead of iterating + + See fit command help for more information on the options and fit + procedures. + NOTE: centerzero plot modifier should be activated (set centerzero 1). + ''' #NOTE duplicates a lot of code from do_fit in fit.py, a call to it could be used directly #but it is easier to control the program flow bypassing it -- 2.26.2