gentoo.git
6 years agonet-mail/mailutils: remove unused patch
Michael Mair-Keimberger (asterix) [Wed, 16 Aug 2017 09:10:15 +0000 (11:10 +0200)]
net-mail/mailutils: remove unused patch

6 years agonet-mail/dot-forward: remove unused patch
Michael Mair-Keimberger (asterix) [Wed, 16 Aug 2017 09:08:39 +0000 (11:08 +0200)]
net-mail/dot-forward: remove unused patch

6 years agoapp-misc/abook: remove unused patches
Michael Mair-Keimberger (asterix) [Wed, 16 Aug 2017 09:04:23 +0000 (11:04 +0200)]
app-misc/abook: remove unused patches

6 years agogames-util/wit: remove unused patch
Michael Mair-Keimberger (asterix) [Wed, 16 Aug 2017 09:19:45 +0000 (11:19 +0200)]
games-util/wit: remove unused patch

6 years agoapp-arch/pigz: remove unused patch
Michael Mair-Keimberger (asterix) [Wed, 16 Aug 2017 09:18:44 +0000 (11:18 +0200)]
app-arch/pigz: remove unused patch

6 years agosci-astronomy/xephem: remove 3.7.6
Michael Palimaka [Sat, 2 Sep 2017 15:10:04 +0000 (01:10 +1000)]
sci-astronomy/xephem: remove 3.7.6

Package-Manager: Portage-2.3.6, Repoman-2.3.3

6 years agosci-astronomy/wcstools: remove 3.9.4
Michael Palimaka [Sat, 2 Sep 2017 15:08:36 +0000 (01:08 +1000)]
sci-astronomy/wcstools: remove 3.9.4

Package-Manager: Portage-2.3.6, Repoman-2.3.3

6 years agodev-python/pyavm: remove 0.9.3
Michael Palimaka [Sat, 2 Sep 2017 15:07:39 +0000 (01:07 +1000)]
dev-python/pyavm: remove 0.9.3

Package-Manager: Portage-2.3.6, Repoman-2.3.3

6 years agosci-astronomy/xephem: remove unused patches
Michael Mair-Keimberger (asterix) [Wed, 16 Aug 2017 12:24:07 +0000 (14:24 +0200)]
sci-astronomy/xephem: remove unused patches

6 years agosci-astronomy/wcstools: remove unsued patches
Michael Mair-Keimberger (asterix) [Wed, 16 Aug 2017 12:23:03 +0000 (14:23 +0200)]
sci-astronomy/wcstools: remove unsued patches

6 years agodev-python/astropy: remove unused patch
Michael Mair-Keimberger (asterix) [Wed, 16 Aug 2017 12:21:43 +0000 (14:21 +0200)]
dev-python/astropy: remove unused patch

6 years agodev-python/pyavm: remove unused patch
Michael Mair-Keimberger (asterix) [Wed, 16 Aug 2017 12:20:43 +0000 (14:20 +0200)]
dev-python/pyavm: remove unused patch

6 years agosys-apps/systemd: fix typo
Matija Skala [Thu, 31 Aug 2017 15:28:01 +0000 (17:28 +0200)]
sys-apps/systemd: fix typo

6 years agoprofiles: add first entry to Gnome 3.26 mask, bug #629636
Gilles Dartiguelongue [Sat, 2 Sep 2017 15:06:18 +0000 (17:06 +0200)]
profiles: add first entry to Gnome 3.26 mask, bug #629636

6 years agox11-misc/sddm: Drop old
Andreas Sturmlechner [Sat, 2 Sep 2017 15:05:03 +0000 (17:05 +0200)]
x11-misc/sddm: Drop old

Package-Manager: Portage-2.3.8, Repoman-2.3.3

6 years agox11-misc/sddm: 0.15.0 version bump
Andreas Sturmlechner [Sat, 2 Sep 2017 14:59:00 +0000 (16:59 +0200)]
x11-misc/sddm: 0.15.0 version bump

Gentoo-bug: 629532
Package-Manager: Portage-2.3.8, Repoman-2.3.3

6 years agoapp-editors/retext: enable python-3.6
Francesco Riosa [Wed, 16 Aug 2017 19:58:15 +0000 (21:58 +0200)]
app-editors/retext: enable python-3.6

The package build and run fine with python 3.6

 * Package:    app-editors/retext-7.0.1
 * Repository: vivovl
 * Maintainer: mrueg@gentoo.org
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux python_targets_python3_6 spell test userland_GNU
 * FEATURES:   compressdebug preserve-libs sandbox splitdebug test userpriv usersandbox
----------------------------------------------------------------------
Ran 38 tests in 2.362s

OK

6 years agoapp-portage/gentoolkit: enable python-3.6
Francesco Riosa [Wed, 16 Aug 2017 20:10:38 +0000 (22:10 +0200)]
app-portage/gentoolkit: enable python-3.6

The package build and run fine with python 3.6

 * Package:    app-portage/gentoolkit-0.4.0
 * Repository: vivovl
 * Maintainer: tools-portage@gentoo.org
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux python_targets_python3_6 userland_GNU
 * FEATURES:   compressdebug preserve-libs sandbox splitdebug test userpriv usersandbox

6 years agodev-libs/protobuf: enable python-3.6
Francesco Riosa [Wed, 16 Aug 2017 21:01:22 +0000 (23:01 +0200)]
dev-libs/protobuf: enable python-3.6

The package build with python 3.6

 * Package:    dev-libs/protobuf-3.3.0
 * Repository: vivovl
 * Maintainer: vapier@gentoo.org tomboy64@sina.cn,proxy-maint@gentoo.org
 * USE:        abi_x86_32 abi_x86_64 amd64 elibc_glibc java kernel_linux python_targets_python3_6 test userland_GNU zlib
 * FEATURES:   compressdebug preserve-libs sandbox splitdebug test userpriv usersandbox

============================================================================
Testsuite summary for Protocol Buffers 3.3.0
============================================================================
============================================================================

6 years agodev-python/pycups: version bump, enable python-3.6
Francesco Riosa [Wed, 16 Aug 2017 21:19:03 +0000 (23:19 +0200)]
dev-python/pycups: version bump, enable python-3.6

The package build with python 3.6

 * Package:    dev-python/pycups-1.9.73-r1
 * Repository: vivovl
 * Maintainer: reavertm@gentoo.org printing@gentoo.org
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux python_targets_python2_7 python_targets_python3_6 userland_GNU
 * FEATURES:   compressdebug preserve-libs sandbox splitdebug test userpriv usersandbox

ebuild has no tests, "app-admin/system-config-printer", the only user on this system work fine

6 years agosci-biology/samtools: Add missing -I. to CPPFLAGS
David Seifert [Sat, 2 Sep 2017 15:01:47 +0000 (17:01 +0200)]
sci-biology/samtools: Add missing -I. to CPPFLAGS

Bug: https://bugs.gentoo.org/show_bug.cgi?id=629666
Package-Manager: Portage-2.3.8, Repoman-2.3.3

6 years agonet-im/mcabber: remove unused patch
Michael Mair-Keimberger [Thu, 17 Aug 2017 07:59:56 +0000 (09:59 +0200)]
net-im/mcabber: remove unused patch

6 years agodev-lisp/sbcl: Bumps version to 1.3.21
Chema Alonso Josa [Sat, 2 Sep 2017 14:57:25 +0000 (16:57 +0200)]
dev-lisp/sbcl: Bumps version to 1.3.21

Package-Manager: Portage-2.3.6, Repoman-2.3.1

6 years agoapp-admin/webalizer: update make.conf path, #624536
Francesco Turco [Thu, 24 Aug 2017 21:17:22 +0000 (23:17 +0200)]
app-admin/webalizer: update make.conf path, #624536

Gentoo-Bug 624536

6 years agonet-dns/opendnssec: update make.conf path, #624534
Francesco Turco [Thu, 24 Aug 2017 21:09:50 +0000 (23:09 +0200)]
net-dns/opendnssec: update make.conf path, #624534

Gentoo-Bug 624534

6 years agosys-devel/icecream: update make.conf path
Francesco Turco [Wed, 23 Aug 2017 20:51:56 +0000 (22:51 +0200)]
sys-devel/icecream: update make.conf path

6 years agosci-biology/velvet: update make.conf path
Francesco Turco [Wed, 23 Aug 2017 20:46:27 +0000 (22:46 +0200)]
sci-biology/velvet: update make.conf path

6 years agoapp-shells/pdsh: update make.conf path
Francesco Turco [Tue, 22 Aug 2017 21:10:16 +0000 (23:10 +0200)]
app-shells/pdsh: update make.conf path

6 years agoapp-vim/cream: update make.conf path
Francesco Turco [Tue, 22 Aug 2017 21:03:02 +0000 (23:03 +0200)]
app-vim/cream: update make.conf path

6 years agomedia-libs/oyranos: remove unused patch
Michael Mair-Keimberger [Thu, 17 Aug 2017 08:16:31 +0000 (10:16 +0200)]
media-libs/oyranos: remove unused patch

6 years agoapp-misc/hexcompare: remove unused patch
Michael Mair-Keimberger [Thu, 17 Aug 2017 08:12:54 +0000 (10:12 +0200)]
app-misc/hexcompare: remove unused patch

6 years agoapp-admin/tmpreaper: remove unused patch
Michael Mair-Keimberger [Thu, 17 Aug 2017 08:12:16 +0000 (10:12 +0200)]
app-admin/tmpreaper: remove unused patch

6 years agomedia-libs/libnspsl: remove unused patch
Michael Mair-Keimberger [Thu, 17 Aug 2017 08:08:07 +0000 (10:08 +0200)]
media-libs/libnspsl: remove unused patch

6 years agoapp-portage/elogviewer: update make.conf.example path
Francesco Turco [Thu, 17 Aug 2017 15:58:59 +0000 (17:58 +0200)]
app-portage/elogviewer: update make.conf.example path

6 years agodev-libs/spdlog: Remove old ebuilds
David Roman [Sat, 19 Aug 2017 21:51:00 +0000 (21:51 +0000)]
dev-libs/spdlog: Remove old ebuilds

6 years agodev-libs/spdlog: bump to 0.14.0
David Roman [Sat, 19 Aug 2017 21:47:18 +0000 (21:47 +0000)]
dev-libs/spdlog: bump to 0.14.0

6 years agodev-util/open-vcdiff: remove 0.8.4-r0
Michael Palimaka [Sat, 2 Sep 2017 14:44:01 +0000 (00:44 +1000)]
dev-util/open-vcdiff: remove 0.8.4-r0

Package-Manager: Portage-2.3.6, Repoman-2.3.3

6 years agoapp-text/htmldoc: remove 1.8.29
Michael Palimaka [Sat, 2 Sep 2017 14:41:47 +0000 (00:41 +1000)]
app-text/htmldoc: remove 1.8.29

Package-Manager: Portage-2.3.6, Repoman-2.3.3

6 years agox11-plugins/astime: remove unused patch
Michael Mair-Keimberger [Sat, 19 Aug 2017 13:17:53 +0000 (15:17 +0200)]
x11-plugins/astime: remove unused patch

6 years agox11-plugins/allin1: remove unused patch
Michael Mair-Keimberger [Sat, 19 Aug 2017 13:17:22 +0000 (15:17 +0200)]
x11-plugins/allin1: remove unused patch

6 years agonet-libs/opal: remove unused patches
Michael Mair-Keimberger [Sat, 19 Aug 2017 13:11:11 +0000 (15:11 +0200)]
net-libs/opal: remove unused patches

6 years agomedia-sound/ario: remove unused patch
Michael Mair-Keimberger [Sat, 19 Aug 2017 13:10:10 +0000 (15:10 +0200)]
media-sound/ario: remove unused patch

6 years agodev-util/open-vcdiff: remove unused patch
Michael Mair-Keimberger [Sat, 19 Aug 2017 13:08:49 +0000 (15:08 +0200)]
dev-util/open-vcdiff: remove unused patch

6 years agodev-libs/openobex: remove unused patch
Michael Mair-Keimberger [Sat, 19 Aug 2017 13:07:03 +0000 (15:07 +0200)]
dev-libs/openobex: remove unused patch

6 years agodev-libs/hiredis: remove unused patches
Michael Mair-Keimberger [Sat, 19 Aug 2017 13:06:07 +0000 (15:06 +0200)]
dev-libs/hiredis: remove unused patches

6 years agodev-lang/erlang: remove unused patch
Michael Mair-Keimberger [Sat, 19 Aug 2017 13:02:00 +0000 (15:02 +0200)]
dev-lang/erlang: remove unused patch

6 years agoapp-text/htmldoc: remove unused patches
Michael Mair-Keimberger [Sat, 19 Aug 2017 13:00:32 +0000 (15:00 +0200)]
app-text/htmldoc: remove unused patches

6 years agoapp-mobilephone/obexftp: remove unused patches
Michael Mair-Keimberger [Sat, 19 Aug 2017 12:56:51 +0000 (14:56 +0200)]
app-mobilephone/obexftp: remove unused patches

6 years agosci-physics/geant: remove unused patches
Michael Mair-Keimberger [Sun, 20 Aug 2017 12:59:10 +0000 (14:59 +0200)]
sci-physics/geant: remove unused patches

6 years agosci-physics/espresso: remove unused patch
Michael Mair-Keimberger [Sun, 20 Aug 2017 12:57:14 +0000 (14:57 +0200)]
sci-physics/espresso: remove unused patch

6 years agox11-misc/xidle: remove unused patch
Michael Mair-Keimberger [Sun, 27 Aug 2017 15:04:25 +0000 (17:04 +0200)]
x11-misc/xidle: remove unused patch

6 years agoprofiles: mask dev-qt/qtphonon for removal
Michael Palimaka [Sat, 2 Sep 2017 14:30:00 +0000 (00:30 +1000)]
profiles: mask dev-qt/qtphonon for removal

6 years agodev-libs/apr-util: remove unused patch
Michael Mair-Keimberger [Tue, 29 Aug 2017 08:59:09 +0000 (10:59 +0200)]
dev-libs/apr-util: remove unused patch

6 years agoapp-emulation/virtualbox: remove unused patch/files
Michael Mair-Keimberger [Tue, 29 Aug 2017 08:57:31 +0000 (10:57 +0200)]
app-emulation/virtualbox: remove unused patch/files

6 years agoapp-emulation/virtualbox-modules: remove unused patch
Michael Mair-Keimberger [Tue, 29 Aug 2017 08:54:16 +0000 (10:54 +0200)]
app-emulation/virtualbox-modules: remove unused patch

6 years agoapp-emulation/virtualbox-guest-additions: remove unused file
Michael Mair-Keimberger [Tue, 29 Aug 2017 08:53:15 +0000 (10:53 +0200)]
app-emulation/virtualbox-guest-additions: remove unused file

6 years agomedia-libs/hamlib: remove unused patches
Michael Mair-Keimberger [Wed, 30 Aug 2017 18:01:25 +0000 (20:01 +0200)]
media-libs/hamlib: remove unused patches

6 years agoprofiles: arm64: Drop obsolete qtwebkit[gstreamer] package.use.mask
Andreas Sturmlechner [Sat, 2 Sep 2017 14:23:35 +0000 (16:23 +0200)]
profiles: arm64: Drop obsolete qtwebkit[gstreamer] package.use.mask

6 years agodev-qt/qtwebkit: Drop USE=gstreamer depending on deprecated slot 0.10
Andreas Sturmlechner [Sat, 2 Sep 2017 14:20:59 +0000 (16:20 +0200)]
dev-qt/qtwebkit: Drop USE=gstreamer depending on deprecated slot 0.10

Gentoo-bug: 629172, 522880
Acked-by: kensington
Package-Manager: Portage-2.3.8, Repoman-2.3.3

6 years agodev-python/configshell-fb: version bump to 1.1.23
Diogo Pereira [Tue, 29 Aug 2017 03:12:36 +0000 (04:12 +0100)]
dev-python/configshell-fb: version bump to 1.1.23

- Add python3_6 to PYTHON_COMPAT
- Change SRC_URI to point to PyPI
- Add PyPI remote to metadata.xml

Package-Manager: Portage-2.3.6, Repoman-2.3.1

6 years agosys-process/anacron: update link to wiki
Francesco Turco [Fri, 1 Sep 2017 20:39:11 +0000 (22:39 +0200)]
sys-process/anacron: update link to wiki

6 years agosys-power/acpid: update link to wiki
Francesco Turco [Fri, 1 Sep 2017 20:33:44 +0000 (22:33 +0200)]
sys-power/acpid: update link to wiki

6 years agosys-kernel/genkernel: update links to wiki
Francesco Turco [Fri, 1 Sep 2017 20:24:26 +0000 (22:24 +0200)]
sys-kernel/genkernel: update links to wiki

6 years agosys-fs/eudev: update links to wiki
Francesco Turco [Fri, 1 Sep 2017 20:18:28 +0000 (22:18 +0200)]
sys-fs/eudev: update links to wiki

6 years agonet-nds/openldap: update link to wiki
Francesco Turco [Fri, 1 Sep 2017 20:02:55 +0000 (22:02 +0200)]
net-nds/openldap: update link to wiki

6 years agomail-mta/netqmail: update link to wiki
Francesco Turco [Fri, 1 Sep 2017 19:54:41 +0000 (21:54 +0200)]
mail-mta/netqmail: update link to wiki

6 years agoapp-shells/zsh: update link to wiki
Francesco Turco [Fri, 1 Sep 2017 19:48:40 +0000 (21:48 +0200)]
app-shells/zsh: update link to wiki

6 years agoprofiles: arm64: Drop obsolete qtmultimedia[gstreamer010] package.use.mask
Andreas Sturmlechner [Sat, 2 Sep 2017 14:06:37 +0000 (16:06 +0200)]
profiles: arm64: Drop obsolete qtmultimedia[gstreamer010] package.use.mask

6 years agodev-qt/qtmultimedia: Drop deprecated USE=gstreamer010
Andreas Sturmlechner [Sat, 2 Sep 2017 14:06:16 +0000 (16:06 +0200)]
dev-qt/qtmultimedia: Drop deprecated USE=gstreamer010

Gentoo-bug: 629142
Package-Manager: Portage-2.3.8, Repoman-2.3.3

6 years agokde-plasma/kwin: Drop deprecated dev-qt/qtmultimedia[gstreamer010] option
Andreas Sturmlechner [Sat, 2 Sep 2017 14:05:01 +0000 (16:05 +0200)]
kde-plasma/kwin: Drop deprecated dev-qt/qtmultimedia[gstreamer010] option

Package-Manager: Portage-2.3.8, Repoman-2.3.3

6 years agonet-libs/libkvkontakte: version bump 5.0.0
Michael Palimaka [Sat, 2 Sep 2017 14:04:50 +0000 (00:04 +1000)]
net-libs/libkvkontakte: version bump 5.0.0

Package-Manager: Portage-2.3.6, Repoman-2.3.3

6 years agonet-libs/libmediawiki: fix license
Michael Palimaka [Sat, 2 Sep 2017 13:50:37 +0000 (23:50 +1000)]
net-libs/libmediawiki: fix license

Package-Manager: Portage-2.3.6, Repoman-2.3.3

6 years agodev-games/tiled: version bump 1.0.3
Michael Palimaka [Sat, 2 Sep 2017 13:49:17 +0000 (23:49 +1000)]
dev-games/tiled: version bump 1.0.3

Package-Manager: Portage-2.3.6, Repoman-2.3.3

6 years agodev-lang/perl: Update to crossperl 1.1.6 for perl 5.24.2 re bug #627130
Kent Fredric [Sat, 2 Sep 2017 13:26:43 +0000 (01:26 +1200)]
dev-lang/perl: Update to crossperl 1.1.6 for perl 5.24.2 re bug #627130

We need at least the same version of cross-perl as supports any given
value of ${PV} as the paths in cross-perl are ${PV} specific, and
we reference those paths using ${PV}

Bug: https://bugs.gentoo.org/627130
Package-Manager: Portage-2.3.6, Repoman-2.3.2

6 years agodev-ruby/json: stable 1.8.6-r1 for ia64, bug #629484
Sergei Trofimovich [Sat, 2 Sep 2017 13:28:51 +0000 (14:28 +0100)]
dev-ruby/json: stable 1.8.6-r1 for ia64, bug #629484

Package-Manager: Portage-2.3.8, Repoman-2.3.3
RepoMan-Options: --include-arches="ia64"

6 years agodev-lang/ruby: stable 2.2.7-r4 for ia64, bug #629484
Sergei Trofimovich [Sat, 2 Sep 2017 13:28:46 +0000 (14:28 +0100)]
dev-lang/ruby: stable 2.2.7-r4 for ia64, bug #629484

Package-Manager: Portage-2.3.8, Repoman-2.3.3
RepoMan-Options: --include-arches="ia64"

6 years agodev-ruby/rubygems: stable 2.6.13 for ia64, bug #629230
Sergei Trofimovich [Sat, 2 Sep 2017 13:28:40 +0000 (14:28 +0100)]
dev-ruby/rubygems: stable 2.6.13 for ia64, bug #629230

Package-Manager: Portage-2.3.8, Repoman-2.3.3
RepoMan-Options: --include-arches="ia64"

6 years agonet-libs/libmediawiki: version bump 5.37.0
Michael Palimaka [Sat, 2 Sep 2017 13:25:16 +0000 (23:25 +1000)]
net-libs/libmediawiki: version bump 5.37.0

Package-Manager: Portage-2.3.6, Repoman-2.3.3

6 years agodev-cpp/eigen: drop hppa keywords
Michael Palimaka [Thu, 31 Aug 2017 12:46:10 +0000 (22:46 +1000)]
dev-cpp/eigen: drop hppa keywords

Package-Manager: Portage-2.3.6, Repoman-2.3.3

6 years agodev-libs/starpu: drop hppa keywords
Michael Palimaka [Thu, 31 Aug 2017 12:11:07 +0000 (22:11 +1000)]
dev-libs/starpu: drop hppa keywords

Package-Manager: Portage-2.3.6, Repoman-2.3.3

6 years agosci-libs/pastix: drop hppa keywords
Michael Palimaka [Thu, 31 Aug 2017 12:09:59 +0000 (22:09 +1000)]
sci-libs/pastix: drop hppa keywords

Package-Manager: Portage-2.3.6, Repoman-2.3.3

6 years agox11-libs/qwt: drop hppa keywords
Michael Palimaka [Wed, 30 Aug 2017 14:41:51 +0000 (00:41 +1000)]
x11-libs/qwt: drop hppa keywords

Package-Manager: Portage-2.3.6, Repoman-2.3.3

6 years agodev-qt/linguist: drop hppa keywords
Michael Palimaka [Wed, 30 Aug 2017 14:41:19 +0000 (00:41 +1000)]
dev-qt/linguist: drop hppa keywords

Package-Manager: Portage-2.3.6, Repoman-2.3.3

6 years agodev-qt/designer: remove kde USE flag
Michael Palimaka [Wed, 30 Aug 2017 14:09:44 +0000 (00:09 +1000)]
dev-qt/designer: remove kde USE flag

Gentoo-bug: 629144
Package-Manager: Portage-2.3.6, Repoman-2.3.3

6 years agodev-lang/perl: 5.28.9999: Update to 5.27.3
Kent Fredric [Sat, 2 Sep 2017 12:58:08 +0000 (00:58 +1200)]
dev-lang/perl: 5.28.9999: Update to 5.27.3

Package-Manager: Portage-2.3.6, Repoman-2.3.2

6 years agoapp-crypt/rhash: Drop Louis Sautier as maintainer
James Le Cuirot [Sat, 2 Sep 2017 12:58:07 +0000 (13:58 +0100)]
app-crypt/rhash: Drop Louis Sautier as maintainer

He no longer wants to maintain this.

Package-Manager: Portage-2.3.8, Repoman-2.3.2

6 years agoapp-crypt/rhash: Apply -lintl fix to BSD libcs (bug #629060)
James Le Cuirot [Sat, 2 Sep 2017 12:37:41 +0000 (13:37 +0100)]
app-crypt/rhash: Apply -lintl fix to BSD libcs (bug #629060)

Package-Manager: Portage-2.3.8, Repoman-2.3.2

6 years agoapp-crypt/rhash: Use elibc USE flags instead of CHOST for fixes
James Le Cuirot [Sat, 2 Sep 2017 12:36:39 +0000 (13:36 +0100)]
app-crypt/rhash: Use elibc USE flags instead of CHOST for fixes

This is more accurate.

Package-Manager: Portage-2.3.8, Repoman-2.3.2

6 years agosci-libs/htslib: Remove old
David Seifert [Sat, 2 Sep 2017 11:07:41 +0000 (13:07 +0200)]
sci-libs/htslib: Remove old

Package-Manager: Portage-2.3.8, Repoman-2.3.3
Closes: https://github.com/gentoo/gentoo/pull/5593

6 years agosci-biology/samtools: Remove old
David Seifert [Sat, 2 Sep 2017 11:07:41 +0000 (13:07 +0200)]
sci-biology/samtools: Remove old

Bug: https://bugs.gentoo.org/show_bug.cgi?id=548170
Bug: https://bugs.gentoo.org/show_bug.cgi?id=620618
Bug: https://bugs.gentoo.org/show_bug.cgi?id=625504
Package-Manager: Portage-2.3.8, Repoman-2.3.3
Closes: https://github.com/gentoo/gentoo/pull/5593

6 years agosci-biology/pysam: Remove old
David Seifert [Sat, 2 Sep 2017 11:07:41 +0000 (13:07 +0200)]
sci-biology/pysam: Remove old

Package-Manager: Portage-2.3.8, Repoman-2.3.3
Closes: https://github.com/gentoo/gentoo/pull/5593

6 years agosci-biology/bwa: Remove old
David Seifert [Sat, 2 Sep 2017 11:07:41 +0000 (13:07 +0200)]
sci-biology/bwa: Remove old

Package-Manager: Portage-2.3.8, Repoman-2.3.3
Closes: https://github.com/gentoo/gentoo/pull/5593

6 years agosci-biology/bcftools: Add 1.5 from sci overlay
David Seifert [Sat, 2 Sep 2017 12:33:32 +0000 (14:33 +0200)]
sci-biology/bcftools: Add 1.5 from sci overlay

Package-Manager: Portage-2.3.8, Repoman-2.3.3

6 years agonet-misc/chrony: Update live ebuild.
Jeroen Roovers [Sat, 2 Sep 2017 12:21:51 +0000 (14:21 +0200)]
net-misc/chrony: Update live ebuild.

Package-Manager: Portage-2.3.8, Repoman-2.3.3

6 years agonet-misc/chrony: Version bump.
Jeroen Roovers [Sat, 2 Sep 2017 12:18:04 +0000 (14:18 +0200)]
net-misc/chrony: Version bump.

Package-Manager: Portage-2.3.8, Repoman-2.3.3

6 years agodev-libs/crypto++: arm64 stable, bug #620926
Alexis Ballier [Sat, 2 Sep 2017 11:54:47 +0000 (13:54 +0200)]
dev-libs/crypto++: arm64 stable, bug #620926

Package-Manager: Portage-2.3.8, Repoman-2.3.3

6 years agonet-misc/curl: stable 7.55.1 for ia64, bug #626776
Sergei Trofimovich [Sat, 2 Sep 2017 11:20:30 +0000 (12:20 +0100)]
net-misc/curl: stable 7.55.1 for ia64, bug #626776

Package-Manager: Portage-2.3.8, Repoman-2.3.3
RepoMan-Options: --include-arches="ia64"

6 years agoprofiles: Remove last mentions of sci-libs/acml
David Seifert [Sat, 2 Sep 2017 11:20:08 +0000 (13:20 +0200)]
profiles: Remove last mentions of sci-libs/acml

6 years agosci-biology/pysam: Bump to 0.12
David Seifert [Sat, 2 Sep 2017 10:44:42 +0000 (12:44 +0200)]
sci-biology/pysam: Bump to 0.12

Package-Manager: Portage-2.3.8, Repoman-2.3.3

6 years agosci-visualization/visit: remove unused patches
Michael Mair-Keimberger [Fri, 1 Sep 2017 06:48:10 +0000 (08:48 +0200)]
sci-visualization/visit: remove unused patches

Closes: https://github.com/gentoo/gentoo/pull/5576