From: Justin Lecher Date: Tue, 3 Mar 2015 15:26:17 +0000 (+0000) Subject: Bump EAPI X-Git-Url: http://git.tremily.us/?a=commitdiff_plain;h=e6027c8b121dd56c2004283152a580752ea9fd42;p=gentoo.git Bump EAPI Package-Manager: portage-2.2.17/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB! --- diff --git a/sci-biology/paml/ChangeLog b/sci-biology/paml/ChangeLog index 2d77e45920b4..9fb8082bd9c5 100644 --- a/sci-biology/paml/ChangeLog +++ b/sci-biology/paml/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/paml -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.15 2010/09/12 17:19:45 xarthisius Exp $ +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.16 2015/03/03 15:26:16 jlec Exp $ + +*paml-4.4c-r1 (03 Mar 2015) + + 03 Mar 2015; Justin Lecher +paml-4.4c-r1.ebuild, + metadata.xml: + Bump EAPI 12 Sep 2010; Kacper Kowalik -paml-4.3a.ebuild, -paml-4.3b.ebuild: @@ -69,4 +75,3 @@ 21 Oct 2006; Donnie Berkholz ; +metadata.xml, +paml-3.15.ebuild: New package: Phylogenetic Analysis by Maximum Likelihood. - diff --git a/sci-biology/paml/Manifest b/sci-biology/paml/Manifest index 1c065cd72f5f..23e1d3432d6e 100644 --- a/sci-biology/paml/Manifest +++ b/sci-biology/paml/Manifest @@ -1,16 +1,27 @@ -----BEGIN PGP SIGNED MESSAGE----- -Hash: SHA1 +Hash: SHA512 -DIST paml4.4c.tar.gz 2891715 RMD160 9a9307b1d32d60ac2b02d76c62d522e49ef50da2 SHA1 4e9cfa207fa08e4eb39efa99091b22bb46c22563 SHA256 08aad25b6b06a359d4f2f12a60ea601c95694864d5f29f7028f67b80890974d6 -EBUILD paml-4.4c.ebuild 1209 RMD160 e6d5e5531287647cbac89f5c4578c5523abe4563 SHA1 833b902f4342f2499d9f0074d26374a70bf76dee SHA256 558abe2195e74b8759b55a46c87e2381fa052956b75fb286925b5fc45516e1be -MISC ChangeLog 2124 RMD160 a8d5aff7d25f8babdd9e11dd32f36da731fb0e2a SHA1 72a9fee2b75c86b270e9417911805fca67ea767a SHA256 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Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4.4c-r1.ebuild,v 1.1 2015/03/03 15:26:16 jlec Exp $ + +EAPI=5 + +inherit toolchain-funcs versionator + +MY_P=$(version_format_string '${PN}$1$2') + +DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood" +HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html" +SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz" + +LICENSE="free-noncomm" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +S=${WORKDIR}/${MY_P} + +src_prepare() { + # Notice send by mail to prof. Ziheng Yang + sed -i "s/\$(CC)/& \$(LDFLAGS)/" src/Makefile || die #335608 +} + +src_compile() { + emake -C src CC="$(tc-getCC)" \ + CFLAGS="${CFLAGS}" LDFLAGS="${LDFLAGS}" +} + +src_install() { + pushd "${S}"/src + dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 + popd + dodoc README.txt doc/* + insinto /usr/share/${PN}/control + doins *.ctl + insinto /usr/share/${PN}/dat + doins stewart* *.dat dat/* + insinto /usr/share/${PN} + doins -r examples/ +}