From: W. Trevor King <wking@tremily.us>
Date: Fri, 28 Jun 2013 11:42:02 +0000 (-0400)
Subject: blurb/abstract.tex: Change pyafm -> unfold-protein and remove Na+
X-Git-Tag: v1.0~11
X-Git-Url: http://git.tremily.us/?a=commitdiff_plain;h=d9c00ebce3975a6b704bce30dad702a21f3b94bf;p=thesis.git

blurb/abstract.tex: Change pyafm -> unfold-protein and remove Na+

The NaCl data had a small number of noisy unfolding events, which
weren't particularly convincing, so they're not in the final thesis.

Instead of mentioning pyafm here, cut straight to the top-level
unfold-protein package, since that's where the experiment control
happens.
---

diff --git a/src/blurb/abstract.tex b/src/blurb/abstract.tex
index a5540b7..f65fda4 100644
--- a/src/blurb/abstract.tex
+++ b/src/blurb/abstract.tex
@@ -14,11 +14,12 @@ correction factors, etc.\ were used in a particular paper.
 \nomenclature[text ]{SMFS}{Single molecule force spectroscopy.}
 
 In this thesis, I introduce an SMFS sofware suite for cantilever
-calibration (\calibcant), experiment control (\pyafm), analysis
-(\Hooke), and postprocessing (\sawsim) in the context of velocity
-clamp unfolding of I27 octomers in buffers with varying concentrations
-of \Na\ and \Ca\ ions\citep{calibcant,pyafm,sandal09,king10}.  All of
-the tools are licensed under open source licenses, which allows SMFS
+calibration (\calibcant), experiment control (\unfoldprotein),
+analysis (\Hooke), and postprocessing (\sawsim) in the context of
+velocity clamp unfolding of I27 octomers in buffers with varying
+concentrations of
+\CaCl\citep{calibcant,unfold-protein,sandal09,king10}.  All of the
+tools are licensed under open source licenses, which allows SMFS
 researchers to centralize future development.  Where possible, care
 has been taken to keep these packages operating system (OS) agnostic.
 The experiment logic in \pyafm\ and \calibcant\ is still nominally OS