From: Sergei Trofimovich <slyfox@gentoo.org>
Date: Mon, 25 May 2020 10:55:52 +0000 (+0100)
Subject: sci-biology/abyss: disable CFLAGS QA check on samtobreak
X-Git-Url: http://git.tremily.us/?a=commitdiff_plain;h=caf207dd9d6bdc71885f9f459625856665972df1;p=gentoo.git

sci-biology/abyss: disable CFLAGS QA check on samtobreak

GHC uses it's own native code generator. Portage's
QA check generates false positive because it assumes
presence of GCC-specific sections.

Workaround false positiove by disabling the check, bug #677600.

Bug: https://bugs.gentoo.org/677600
Package-Manager: Portage-2.3.100, Repoman-2.3.22
Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
---

diff --git a/sci-biology/abyss/abyss-2.0.3-r1.ebuild b/sci-biology/abyss/abyss-2.0.3-r1.ebuild
index 6c8571fafa60..800a45964cd0 100644
--- a/sci-biology/abyss/abyss-2.0.3-r1.ebuild
+++ b/sci-biology/abyss/abyss-2.0.3-r1.ebuild
@@ -29,6 +29,14 @@ DEPEND="${RDEPEND}
 
 PATCHES=("${FILESDIR}"/${PN}-2.0.3-prog-AR.patch)
 
+# GHC uses it's own native code generator. Portage's
+# QA check generates false positive because it assumes
+# presence of GCC-specific sections.
+#
+# Workaround false positiove by disabling the check completely.
+# bug #677600
+QA_FLAGS_IGNORED='/usr/bin/abyss-samtobreak'
+
 # todo: --enable-maxk=N configure option
 # todo: fix automagic mpi toggling