From: W. Trevor King <wking@tremily.us>
Date: Thu, 13 Jun 2013 23:11:36 +0000 (-0400)
Subject: calibcant/discussion.tex: Cite PNAS and Nature for data archival
X-Git-Tag: v1.0~85
X-Git-Url: http://git.tremily.us/?a=commitdiff_plain;h=c16bec6f5ab8825fd4d48f2089d124f16dfb0e33;p=thesis.git

calibcant/discussion.tex: Cite PNAS and Nature for data archival
---

diff --git a/src/calibcant/discussion.tex b/src/calibcant/discussion.tex
index 6f1eb23..b40f38a 100644
--- a/src/calibcant/discussion.tex
+++ b/src/calibcant/discussion.tex
@@ -171,13 +171,13 @@ the calculated $\kappa$.
 
 Scientific data is not thrown away after analysis.  Organizations may
 have standards for archival, and many journals require supporting data
-to be available on request for a number of years after
-publication\citep{TODO}.  Both the raw data and the experimental
-parameters used to collect need to be preserved, but managing this
-manually is tedious and error prone.  Lab notebooks rarely contain
-\emph{all} of the parameters used to collect and analyze a particular
-calibration.  Data collected with \calibcant\ is saved in
-\citetalias{hdf5} with the full configuration
+to be available on request after publication or archived in public
+databases\citep{pnas-data-archival,nature-data-archival}.  Both the
+raw data and the experimental parameters used to collect need to be
+preserved, but managing this manually is tedious and error prone.  Lab
+notebooks rarely contain \emph{all} of the parameters used to collect
+and analyze a particular calibration.  Data collected with
+\calibcant\ is saved in \citetalias{hdf5} with the full configuration
 (\cref{sec:pyafm:h5config}), bundling all of the information together
 in a single file.
 
diff --git a/src/calibcant/main.bib b/src/calibcant/main.bib
index e4b95b2..36c4c78 100644
--- a/src/calibcant/main.bib
+++ b/src/calibcant/main.bib
@@ -1,5 +1,9 @@
 % Particular to this section.
 
+@string{NAT = "Nature"}
+@string{PNAS = "Proceedings of the National Academy of Sciences of the
+  United States of America"}
+
 @Misc{mathworld-lorentzian,
   author = "Eric W.\ Weisstein",
   title = "Lorentzian Function",
@@ -57,3 +61,44 @@
   month = "TODO",
   year = "TODO",
 }
+
+@misc{ pnas-data-archival,
+  author = PNAS,
+  title = {{PNAS} Information for Authors},
+  year = 2013,
+  month = feb,
+  url = {http://www.pnas.org/site/misc/iforc.pdf},
+  excerpt = {From \emph{Journal Policies (x)}:
+    \begin{quote}
+       \emph{Materials and Data Availability.}  To allow others to
+       replicate and build on work published in PNAS, authors must
+       make materials, data, and associated protocols available to
+       readers.  \ldots Data not shown and personal communications
+       cannot be used to support claims in the work.  Authors are
+       encouraged to use SI to show all neces- sary data.  Authors are
+       encouraged to deposit as much of their data as possible in
+       publicly accessible databases.  \ldots
+    \end{quote}
+    },
+}
+
+@misc{ nature-data-archival,
+  author = NAT,
+  title = {Guide to Publication Policies of the Nature Journals},
+  year = 2013,
+  month = apr,
+  day = 30,
+  url = {http://www.nature.com/authors/gta.pdf},
+  excerpt = {From \emph{Sharing data sets}
+    \begin{quote}
+      A condition of publication in a Nature journal is that authors
+      are required to make materials, data and associated protocols
+      promptly available to others without undue qualifications.
+
+      Data sets must be made freely available to readers from the date
+      of publication, and must be provided to editors and
+      peer-reviewers at submission, for the purposes of evaluating the
+      manuscript.
+    \end{quote}
+  },
+}