From: Olivier Fisette <ribosome@gentoo.org>
Date: Thu, 23 Dec 2004 18:54:25 +0000 (+0000)
Subject: Moving to sci-biology/clustalw
X-Git-Url: http://git.tremily.us/?a=commitdiff_plain;h=bffcdcf74071cbb19367867663f8cabe6eaa04e3;p=gentoo.git

Moving to sci-biology/clustalw
---

diff --git a/app-sci/clustalw/ChangeLog b/app-sci/clustalw/ChangeLog
deleted file mode 100644
index ab739d107025..000000000000
--- a/app-sci/clustalw/ChangeLog
+++ /dev/null
@@ -1,35 +0,0 @@
-# ChangeLog for app-sci/clustalw
-# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/clustalw/ChangeLog,v 1.12 2004/11/20 23:51:07 sekretarz Exp $
-
-  21 Nov 2004; Karol Wojtaszek <sekretarz@gentoo.org>
-  clustalw-1.83-r1.ebuild:
-  Added to ~amd64, bug #71865
-
-  14 Oct 2004; Olivier Fisette <ribosome@gentoo.org> clustalw-1.83-r1.ebuild:
-  Fixed gcc with gcc.eclass. gongloo left some mistakes.
-
-  14 Oct 2004; Hasan Khalil <gongloo@gentoo.org> clustalw-1.83-r1.ebuild:
-  Fixed gcc with gcc.eclass. Keyworded ~ppc-macos.
-
-  05 Oct 2004; Olivier Fisette <ribosome@gentoo.org> clustalw-1.83-r1.ebuild:
-  Fixed overly verbose description.
-
-*clustalw-1.83-r1 (29 Sep 2004)
-
-  29 Sep 2004; Olivier Fisette <ribosome@gentoo.org> +clustalw-1.83-r1.ebuild,
-  -clustalw-1.83.ebuild:
-  Fixed bugs pertaining to "CFLAGS" and help files.
-
-  01 Jul 2004; Jeremy Huddleston <eradicator@gentoo.org> clustalw-1.83.ebuild:
-  virtual/glibc -> virtual/libc
-
-  19 Apr 2004; Patrick Kursawe <phosphan@gentoo.org> clustalw-1.83.ebuild:
-  Bumped to stable, using epatch now
-
-*clustalw-1.83 (04 Apr 2003)
-
-  04 Apr 2003; Michael Imhof <tantive@gentoo.org> :
-  Initial release.
-  This ebuild was submitted by Gontran Zepeda <gontran@gontran.net>.
-  Should close #18679.
diff --git a/app-sci/clustalw/Manifest b/app-sci/clustalw/Manifest
deleted file mode 100644
index 50bbff035654..000000000000
--- a/app-sci/clustalw/Manifest
+++ /dev/null
@@ -1,14 +0,0 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
-MD5 362ab7f831a113dad4938a3cdcdd0334 clustalw-1.83-r1.ebuild 1054
-MD5 d4ab4ced68bf7a52aa377a61559afc45 ChangeLog 1306
-MD5 8c623e53daafa025137077c6b65815bd metadata.xml 156
-MD5 59931bb873b284e7ab0b7c452e87d075 files/digest-clustalw-1.83-r1 69
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v1.2.6 (GNU/Linux)
-
-iD8DBQFBn9h0Z/iYVBmujdURAmWBAKDhD5MF+KbxLqURWpNP30ONePZayQCeOPe6
-mm/hkqVb1vQWOvle8FycNLg=
-=2TOf
------END PGP SIGNATURE-----
diff --git a/app-sci/clustalw/clustalw-1.83-r1.ebuild b/app-sci/clustalw/clustalw-1.83-r1.ebuild
deleted file mode 100644
index af12274468bf..000000000000
--- a/app-sci/clustalw/clustalw-1.83-r1.ebuild
+++ /dev/null
@@ -1,38 +0,0 @@
-# Copyright 1999-2004 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/clustalw/clustalw-1.83-r1.ebuild,v 1.7 2004/11/20 23:51:07 sekretarz Exp $
-
-inherit gcc
-
-DESCRIPTION="General purpose multiple alignment program for DNA and proteins"
-HOMEPAGE="http://www.embl-heidelberg.de/~seqanal/"
-SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/unix/clustalw/${PN}${PV}.UNIX.tar.gz"
-
-LICENSE="clustalw"
-SLOT="0"
-KEYWORDS="alpha ppc sparc x86 ~ppc-macos ~amd64"
-IUSE=""
-
-DEPEND="virtual/libc"
-
-S=${WORKDIR}/${PN}${PV}
-
-src_unpack(){
-	unpack ${A}
-	cd ${S}
-	sed -i -e "s/CC	= cc/CC	= $(gcc-getCC)/" makefile
-	sed -i -e "s/CFLAGS  = -c -O/CFLAGS  = -c ${CFLAGS}/" makefile
-	sed -i -e "s/LFLAGS	= -O -lm/LFLAGS	= -lm ${CFLAGS}/" makefile
-	sed -i -e "s%clustalw_help%/usr/share/doc/${PF}/clustalw_help%" clustalw.c
-}
-
-src_compile() {
-	emake || die
-}
-
-src_install() {
-	dobin clustalw || die
-	dodoc README clustalv.doc clustalw.doc clustalw.ms
-	insinto /usr/share/doc/${PF}
-	doins clustalw_help
-}
diff --git a/app-sci/clustalw/files/digest-clustalw-1.83-r1 b/app-sci/clustalw/files/digest-clustalw-1.83-r1
deleted file mode 100644
index f2c2bf79faef..000000000000
--- a/app-sci/clustalw/files/digest-clustalw-1.83-r1
+++ /dev/null
@@ -1 +0,0 @@
-MD5 dc240277e5bb14ffc106d4a5fda87752 clustalw1.83.UNIX.tar.gz 166863
diff --git a/app-sci/clustalw/metadata.xml b/app-sci/clustalw/metadata.xml
deleted file mode 100644
index b229aec85b8f..000000000000
--- a/app-sci/clustalw/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-</pkgmetadata>