From: Olivier Fisette Date: Thu, 23 Dec 2004 21:23:36 +0000 (+0000) Subject: Moving to sci-biology/prosite X-Git-Url: http://git.tremily.us/?a=commitdiff_plain;h=ad0b26be095d0138c5406dfd85d751206fd30cd7;p=gentoo.git Moving to sci-biology/prosite --- diff --git a/app-sci/prosite/ChangeLog b/app-sci/prosite/ChangeLog deleted file mode 100644 index 3db7b5137a2a..000000000000 --- a/app-sci/prosite/ChangeLog +++ /dev/null @@ -1,52 +0,0 @@ -# ChangeLog for app-sci/prosite -# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/app-sci/prosite/ChangeLog,v 1.9 2004/12/14 00:45:03 ribosome Exp $ - -*prosite-18.41 (13 Dec 2004) - - 13 Dec 2004; Olivier Fisette prosite-18.40.ebuild, - +prosite-18.41.ebuild: - New version: 18.41. Added 18.40 to x86. - -*prosite-18.40 (23 Nov 2004) - - 23 Nov 2004; Olivier Fisette prosite-18.39.ebuild, - +prosite-18.40.ebuild: - New version: 18.40. Added 18.39 to x86. - -*prosite-18.39 (08 Nov 2004) - - 08 Nov 2004; Olivier Fisette -prosite-18.36.ebuild, - prosite-18.38.ebuild, +prosite-18.39.ebuild: - New version (18.39). Added 18.38 to x86. Removed obsolete version. - -*prosite-18.38 (30 Oct 2004) - - 30 Oct 2004; Olivier Fisette -prosite-18.32.ebuild, - prosite-18.36.ebuild, +prosite-18.38.ebuild: - Removed obsolete version (18.32). Added to x86 (18.36). New version (18.38). - -*prosite-18.36 (29 Sep 2004) - - 29 Sep 2004; Olivier Fisette -prosite-18.26.ebuild, - prosite-18.32.ebuild, +prosite-18.36.ebuild: - Added x86 to 18.32. New version 18.36. Removed old version. - -*prosite-18.32 (10 Aug 2004) - - 10 Aug 2004; Olivier Fisette - prosite-18.32.ebuild: - Updated package. - prosite-18.26.ebuild: - Added to x86. - - 26 Jun 2004; David Holm prosite-18.26.ebuild: - Added to ~ppc. - -*prosite-18.26 (24 Jun 2004) - - 24 Jun 2004; Olivier Fisette - prosite-18.26.ebuild, metadata.xml : - Initial import. Ebuild submitted by Olivier Fisette . - Reference: Gentoo Bugzilla, bug #54326 - diff --git a/app-sci/prosite/Manifest b/app-sci/prosite/Manifest deleted file mode 100644 index 552afc4f7883..000000000000 --- a/app-sci/prosite/Manifest +++ /dev/null @@ -1,10 +0,0 @@ -MD5 ad15788d597d8132164264bf5a47152e prosite-18.41.ebuild 1053 -MD5 1dc5f78c8c1ddac5f64b607d3415258e prosite-18.39.ebuild 1052 -MD5 1f57fc61b02617b80c7a46013804997e prosite-18.40.ebuild 1052 -MD5 9e6b6b03257c738eef4fc8d1244c10a4 ChangeLog 1717 -MD5 81b73af5f2f4778bea2dde0b55620129 metadata.xml 810 -MD5 c04f92d03ee5c94d9d769acfb3c9a949 prosite-18.38.ebuild 1052 -MD5 681e2770cee55b9f73f52416d5afff8b files/digest-prosite-18.38 67 -MD5 be30a2901bbe78916e8e5ba3121a7262 files/digest-prosite-18.39 67 -MD5 72e0289273b3085b31e4244ba04f1b13 files/digest-prosite-18.40 67 -MD5 9c2f10f8894ca2905205055e4b8d0063 files/digest-prosite-18.41 67 diff --git a/app-sci/prosite/files/digest-prosite-18.38 b/app-sci/prosite/files/digest-prosite-18.38 deleted file mode 100644 index d0aa4f243dd8..000000000000 --- a/app-sci/prosite/files/digest-prosite-18.38 +++ /dev/null @@ -1 +0,0 @@ -MD5 50e94ad7380dc99ff3c6ecca4591b168 prosite-18.38.tar.bz2 2993998 diff --git a/app-sci/prosite/files/digest-prosite-18.39 b/app-sci/prosite/files/digest-prosite-18.39 deleted file mode 100644 index cd2c0bb30694..000000000000 --- a/app-sci/prosite/files/digest-prosite-18.39 +++ /dev/null @@ -1 +0,0 @@ -MD5 1cbc9e4d8bed13494cfd513c98298b34 prosite-18.39.tar.bz2 2999823 diff --git a/app-sci/prosite/files/digest-prosite-18.40 b/app-sci/prosite/files/digest-prosite-18.40 deleted file mode 100644 index 287302f8971c..000000000000 --- a/app-sci/prosite/files/digest-prosite-18.40 +++ /dev/null @@ -1 +0,0 @@ -MD5 fd7ba3d6b00474d22cc0f3ed12ea986d prosite-18.40.tar.bz2 3021114 diff --git a/app-sci/prosite/files/digest-prosite-18.41 b/app-sci/prosite/files/digest-prosite-18.41 deleted file mode 100644 index 0d3e1612952b..000000000000 --- a/app-sci/prosite/files/digest-prosite-18.41 +++ /dev/null @@ -1 +0,0 @@ -MD5 682d5ce408604a01fa7c6b3c58c3a5b8 prosite-18.41.tar.bz2 3045746 diff --git a/app-sci/prosite/metadata.xml b/app-sci/prosite/metadata.xml deleted file mode 100644 index bd408926e90a..000000000000 --- a/app-sci/prosite/metadata.xml +++ /dev/null @@ -1,19 +0,0 @@ - - - - - ribosome@gentoo.org - Olivier Fisette - - sci - - A protein families and domains database maintained at the Swiss - Institude for Bioinformatics. It consists of biologically significant - sites, patterns and profiles that help to reliably identify to which - known protein family (if any) a new sequence belongs. PROSITE currently - contains patterns and profiles specific for more than a thousand - protein families or domains. Each of these signatures comes with - documentation providing background information on the structure and - function of these proteins. - - diff --git a/app-sci/prosite/prosite-18.38.ebuild b/app-sci/prosite/prosite-18.38.ebuild deleted file mode 100644 index 519a0bf8d335..000000000000 --- a/app-sci/prosite/prosite-18.38.ebuild +++ /dev/null @@ -1,35 +0,0 @@ -# Copyright 1999-2004 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/app-sci/prosite/prosite-18.38.ebuild,v 1.2 2004/11/09 02:25:06 ribosome Exp $ - -DESCRIPTION="A protein families and domains database" -HOMEPAGE="http://ca.expasy.org/${PN}" -SRC_URI="mirror://gentoo/${P}.tar.bz2" -LICENSE="swiss-prot" -SLOT="0" -KEYWORDS="x86 ~ppc" -IUSE="no-emboss no-rawdb" - -src_compile() { - # Index the database for use with EMBOSS if EMBOSS is installed and - # the user did not explicitly request not to index the database. - if [ -e /usr/bin/prosextract ] && ! use no-emboss; then - mkdir PROSITE - einfo "Indexing PROSITE for usage with EMBOSS." - EMBOSS_DATA=. prosextract -auto -infdat ${S} || die \ - "Indexing PROSITE failed." - fi -} - -src_install() { - if ! use no-rawdb; then - insinto /usr/share/${PN} - doins ${PN}.{doc,dat,lis} - fi - dodoc *.txt - dohtml prosuser.htm - if [ -e /usr/bin/prosextract ] && ! use no-emboss; then - insinto /usr/share/EMBOSS/data/PROSITE - doins PROSITE/* - fi -} diff --git a/app-sci/prosite/prosite-18.39.ebuild b/app-sci/prosite/prosite-18.39.ebuild deleted file mode 100644 index 542cd0289a50..000000000000 --- a/app-sci/prosite/prosite-18.39.ebuild +++ /dev/null @@ -1,35 +0,0 @@ -# Copyright 1999-2004 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/app-sci/prosite/prosite-18.39.ebuild,v 1.2 2004/11/23 20:20:24 ribosome Exp $ - -DESCRIPTION="A protein families and domains database" -HOMEPAGE="http://ca.expasy.org/${PN}" -SRC_URI="mirror://gentoo/${P}.tar.bz2" -LICENSE="swiss-prot" -SLOT="0" -KEYWORDS="x86 ~ppc" -IUSE="no-emboss no-rawdb" - -src_compile() { - # Index the database for use with EMBOSS if EMBOSS is installed and - # the user did not explicitly request not to index the database. - if [ -e /usr/bin/prosextract ] && ! use no-emboss; then - mkdir PROSITE - einfo "Indexing PROSITE for usage with EMBOSS." - EMBOSS_DATA=. prosextract -auto -infdat ${S} || die \ - "Indexing PROSITE failed." - fi -} - -src_install() { - if ! use no-rawdb; then - insinto /usr/share/${PN} - doins ${PN}.{doc,dat,lis} - fi - dodoc *.txt - dohtml prosuser.htm - if [ -e /usr/bin/prosextract ] && ! use no-emboss; then - insinto /usr/share/EMBOSS/data/PROSITE - doins PROSITE/* - fi -} diff --git a/app-sci/prosite/prosite-18.40.ebuild b/app-sci/prosite/prosite-18.40.ebuild deleted file mode 100644 index 8f23f0642296..000000000000 --- a/app-sci/prosite/prosite-18.40.ebuild +++ /dev/null @@ -1,35 +0,0 @@ -# Copyright 1999-2004 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/app-sci/prosite/prosite-18.40.ebuild,v 1.2 2004/12/14 00:45:03 ribosome Exp $ - -DESCRIPTION="A protein families and domains database" -HOMEPAGE="http://ca.expasy.org/${PN}" -SRC_URI="mirror://gentoo/${P}.tar.bz2" -LICENSE="swiss-prot" -SLOT="0" -KEYWORDS="x86 ~ppc" -IUSE="no-emboss no-rawdb" - -src_compile() { - # Index the database for use with EMBOSS if EMBOSS is installed and - # the user did not explicitly request not to index the database. - if [ -e /usr/bin/prosextract ] && ! use no-emboss; then - mkdir PROSITE - einfo "Indexing PROSITE for usage with EMBOSS." - EMBOSS_DATA=. prosextract -auto -infdat ${S} || die \ - "Indexing PROSITE failed." - fi -} - -src_install() { - if ! use no-rawdb; then - insinto /usr/share/${PN} - doins ${PN}.{doc,dat,lis} - fi - dodoc *.txt - dohtml prosuser.htm - if [ -e /usr/bin/prosextract ] && ! use no-emboss; then - insinto /usr/share/EMBOSS/data/PROSITE - doins PROSITE/* - fi -} diff --git a/app-sci/prosite/prosite-18.41.ebuild b/app-sci/prosite/prosite-18.41.ebuild deleted file mode 100644 index 8bfae236870c..000000000000 --- a/app-sci/prosite/prosite-18.41.ebuild +++ /dev/null @@ -1,35 +0,0 @@ -# Copyright 1999-2004 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/app-sci/prosite/prosite-18.41.ebuild,v 1.1 2004/12/14 00:45:03 ribosome Exp $ - -DESCRIPTION="A protein families and domains database" -HOMEPAGE="http://ca.expasy.org/${PN}" -SRC_URI="mirror://gentoo/${P}.tar.bz2" -LICENSE="swiss-prot" -SLOT="0" -KEYWORDS="~x86 ~ppc" -IUSE="no-emboss no-rawdb" - -src_compile() { - # Index the database for use with EMBOSS if EMBOSS is installed and - # the user did not explicitly request not to index the database. - if [ -e /usr/bin/prosextract ] && ! use no-emboss; then - mkdir PROSITE - einfo "Indexing PROSITE for usage with EMBOSS." - EMBOSS_DATA=. prosextract -auto -infdat ${S} || die \ - "Indexing PROSITE failed." - fi -} - -src_install() { - if ! use no-rawdb; then - insinto /usr/share/${PN} - doins ${PN}.{doc,dat,lis} - fi - dodoc *.txt - dohtml prosuser.htm - if [ -e /usr/bin/prosextract ] && ! use no-emboss; then - insinto /usr/share/EMBOSS/data/PROSITE - doins PROSITE/* - fi -}