From: Fernando Perez <Fernando.Perez@berkeley.edu>
Date: Sat, 29 Dec 2012 19:43:59 +0000 (-0500)
Subject: workshop_checklist.py: Add installation-testing script
X-Git-Url: http://git.tremily.us/?a=commitdiff_plain;h=868a36fb03276b3924697c9b35cf606a5b41368a;p=swc-boot-camp.git

workshop_checklist.py: Add installation-testing script

This script was linked to by Eric Bray [1] and hosted on Fernando
Perez's website [2].

[1]: https://github.com/swcarpentry/website/issues/38#issuecomment-11386945
[2]: http://fperez.org/py4science/workshop_checklist.py
---

868a36fb03276b3924697c9b35cf606a5b41368a
diff --git a/workshop_checklist.py b/workshop_checklist.py
new file mode 100644
index 0000000..8792498
--- /dev/null
+++ b/workshop_checklist.py
@@ -0,0 +1,173 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+"""Minimal test script to check for modules needed in python workshop.
+
+Execute this code at the command line by typing:
+
+python workshop_checklist.py
+
+How to get a command line:
+
+- On OSX run this with the Terminal application.
+
+- On Windows, go to the Start menu, select 'Run' and type 'cmd' (without the
+quotes) to run the cmd.exe Windows Command Prompt.
+
+Run the script and follow the instructions it prints at the end.
+"""
+
+##############################################################################
+# Config here
+
+# Modules whose imports we're going to validate
+MODULES = ['IPython',
+           'numpy',
+           'scipy',
+           'scipy.io',
+           'matplotlib','pylab',
+           # 'sympy', 'Cython', 'networkx', 'mayavi.mlab',
+           # 'setuptools',
+           ]
+
+##############################################################################
+# Code begins
+
+# Standard library imports
+import glob
+import os
+import platform
+import sys
+
+from StringIO import StringIO
+
+# Third-party imports
+import nose
+import nose.tools as nt
+
+#-----------------------------------------------------------------------------
+# Generic utility functions
+def sys_info():
+    """Summarize some info about the system"""
+
+    print '=================='
+    print 'System information'
+    print '=================='
+    print 'os.name      :',os.name
+    try:
+        print 'os.uname     :',os.uname()
+    except:
+        pass
+    print 'platform     :',sys.platform
+    print 'platform+    :',platform.platform()
+    print 'prefix       :',sys.prefix
+    print 'exec_prefix  :',sys.exec_prefix
+    print 'executable   :',sys.executable
+    print 'version_info :',sys.version_info
+    print 'version      :',sys.version
+    print '=================='
+
+
+#-----------------------------------------------------------------------------
+# Tests
+
+def check_import(mname):
+    "Check that the given name imports correctly"
+    exec "import %s as m" % mname
+
+    if mname == 'matplotlib':
+        m.use('Agg')
+        m.rcParams['figure.subplot.top']= 0.85
+    
+    try:
+        vinfo = m.__version__
+    except AttributeError:
+        vinfo = '*no info*'
+
+    print 'MOD: %s, version: %s' % (mname,vinfo)
+
+
+# Test generators are best written without docstrings, because nose can then
+# show the parameters being used.
+def test_imports():
+    for mname in MODULES:
+        yield check_import, mname
+
+
+# Test generator, don't put a docstring in it
+def test_loadtxt():
+    import numpy as np
+    import numpy.testing as npt
+
+    # Examples taken from the loadtxt docstring
+    array = np.array
+    
+    c = StringIO("0 1\n2 3")
+    a1 = np.loadtxt(c)
+    a2 = np.array([[ 0.,  1.],
+                   [ 2.,  3.]])
+    yield npt.assert_array_equal,a1,a2
+
+    d = StringIO("M 21 72\nF 35 58")
+    a1 = np.loadtxt(d, dtype={'names': ('gender', 'age', 'weight'),
+                         'formats': ('S1', 'i4', 'f4')})
+    
+    a2 = np.array([('M', 21, 72.0), ('F', 35, 58.0)],
+                  dtype=[('gender', '|S1'), ('age', '<i4'), ('weight', '<f4')])
+    yield npt.assert_array_equal,a1,a2
+
+    c = StringIO("1,0,2\n3,0,4")
+    x,y = np.loadtxt(c, delimiter=',', usecols=(0,2), unpack=True)
+    yield npt.assert_array_equal,x,np.array([ 1.,  3.])
+    yield npt.assert_array_equal,y,np.array([ 2.,  4.])
+
+
+def test_plot():
+    "Simple plot generation."
+    from matplotlib import pyplot as plt
+    plt.figure()
+    plt.plot([1,2,3])
+    plt.xlabel('some numbers')
+    plt.savefig('tmp_test_plot.png')
+
+
+def test_plot_math():
+    "Plots with math"
+    from matplotlib import pyplot as plt
+    plt.figure()
+    plt.plot([1,2,3],label='data')
+    t=(r'And X is $\sum_{i=0}^\infty \gamma_i + \frac{\alpha^{i^2}}{\gamma}'
+       r'+ \cos(2 \theta^2)$')
+    plt.title(t)
+    plt.legend()
+    plt.grid()
+    plt.savefig('tmp_test_plot_math.png')
+
+
+def cleanup_pngs():
+    """Remove temporary pngs made by our plotting tests"""
+
+    for f in glob.glob('tmp_test_plot*.png'):
+        try:
+            os.remove(f)
+        except OSError:
+            print '*** Error: could not remove file',f
+            
+
+#-----------------------------------------------------------------------------
+# Main routine, executed when this file is run as a script
+#
+if __name__ == '__main__':
+    print "Running tests:"
+    # This call form is ipython-friendly
+    nose.runmodule(argv=[__file__,'-vvs'],
+                   exit=False)
+    print """
+***************************************************************************
+                           TESTS FINISHED
+***************************************************************************
+
+If the printout above did not finish in 'OK' but instead says 'FAILED', copy
+and send the *entire* output (all info above and summary below) to the
+instructor for help.
+"""
+    sys_info()