From: Olivier Fisette <ribosome@gentoo.org>
Date: Tue, 23 Nov 2004 20:23:18 +0000 (+0000)
Subject: New version.
X-Git-Url: http://git.tremily.us/?a=commitdiff_plain;h=82c1eadaec31687c052198327a7ebfd47a62c241;p=gentoo.git

New version.
---

diff --git a/app-sci/cutg/ChangeLog b/app-sci/cutg/ChangeLog
index 01831071428f..e1b2938beffb 100644
--- a/app-sci/cutg/ChangeLog
+++ b/app-sci/cutg/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for app-sci/cutg
 # Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/cutg/ChangeLog,v 1.6 2004/11/01 01:48:18 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/cutg/ChangeLog,v 1.7 2004/11/23 20:23:18 ribosome Exp $
+
+*cutg-144 (23 Nov 2004)
+
+  23 Nov 2004; Olivier Fisette <ribosome@gentoo.org> +cutg-144.ebuild:
+  New version.
 
   31 Oct 2004; Olivier Fisette <ribosome@gentoo.org> -cutg-142.ebuild,
   cutg-143.ebuild:
diff --git a/app-sci/cutg/cutg-144.ebuild b/app-sci/cutg/cutg-144.ebuild
new file mode 100644
index 000000000000..e198ba24a7b6
--- /dev/null
+++ b/app-sci/cutg/cutg-144.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/app-sci/cutg/cutg-144.ebuild,v 1.1 2004/11/23 20:23:18 ribosome Exp $
+
+DESCRIPTION="Codon usage tables calculated from GenBank"
+HOMEPAGE="http://www.kazusa.or.jp/codon/"
+SRC_URI="ftp://ftp.kazusa.or.jp/pub/codon/current/compressed/CUTG.${PV}.tar.gz"
+LICENSE="public-domain"
+
+SLOT="0"
+KEYWORDS="~x86 ~ppc"
+IUSE="no-emboss no-rawdb"
+
+S=${WORKDIR}
+
+src_compile() {
+	# Index the database for use with emboss if emboss is installed and
+	# the user did not explicitly request not to index the database.
+	if [ -e /usr/bin/cutgextract ] && ! use no-emboss; then
+		mkdir CODONS
+		einfo "Indexing CUTG for usage with EMBOSS."
+		EMBOSS_DATA=. cutgextract -auto -directory ${S} || die \
+			"Indexing CUTG failed."
+	fi
+}
+
+src_install() {
+	if ! use no-rawdb; then
+		mkdir -p ${D}/usr/share/${PN}
+		mv *.codon *.spsum ${D}/usr/share/${PN}
+	fi
+	dodoc README
+	if [ -e /usr/bin/cutgextract ] && ! use no-emboss; then
+		mkdir -p ${D}/usr/share/EMBOSS/data/CODONS
+		cd CODONS
+		for file in *; do
+			mv ${file} ${D}/usr/share/EMBOSS/data/CODONS
+		done
+	fi
+}
diff --git a/app-sci/cutg/files/digest-cutg-144 b/app-sci/cutg/files/digest-cutg-144
new file mode 100644
index 000000000000..f79c6a6dc995
--- /dev/null
+++ b/app-sci/cutg/files/digest-cutg-144
@@ -0,0 +1 @@
+MD5 2bea63f0124ef7cb360bddeb0465e548 CUTG.144.tar.gz 124856915