From: Olivier Fisette Date: Wed, 15 Mar 2006 14:34:54 +0000 (+0000) Subject: New version X-Git-Url: http://git.tremily.us/?a=commitdiff_plain;h=82af7ca5df9245a2f95dd17d0c8b905d229c1235;p=gentoo.git New version Package-Manager: portage-2.0.54 --- diff --git a/sci-biology/prosite/ChangeLog b/sci-biology/prosite/ChangeLog index a65f9cbd32b7..10c65dd79a4d 100644 --- a/sci-biology/prosite/ChangeLog +++ b/sci-biology/prosite/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/prosite # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.75 2006/02/22 21:04:48 grobian Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.76 2006/03/15 14:33:47 ribosome Exp $ + +*prosite-19.22 (15 Mar 2006) + + 15 Mar 2006; Olivier Fisette +prosite-19.22.ebuild: + New version. 22 Feb 2006; Fabian Groffen prosite-19.18.ebuild: Marked ppc-macos stable (bug #123334) diff --git a/sci-biology/prosite/Manifest b/sci-biology/prosite/Manifest index 01786f972efe..710718488ea9 100644 --- a/sci-biology/prosite/Manifest +++ b/sci-biology/prosite/Manifest @@ -1,36 +1,14 @@ MD5 096b7d8e66a12a851726b5ab34a1f2fb ChangeLog 11705 -RMD160 efdc5863eed3443f20980dd8d99422e0f73c4d8d ChangeLog 11705 -SHA256 22c067c4af7021078c37746bb46346b5e7ec9b391e7908329bde9022247e48cd ChangeLog 11705 MD5 2f35d065ff4b9256d80f3923fa864c5c files/digest-prosite-19.16 67 -RMD160 fe669c23fd4cad9e4bb61e3fe24cd11a544eee90 files/digest-prosite-19.16 67 -SHA256 bc527623b4a4462badfc534a31167d6481e0c6f9bdd7c692d79ad9ada2af5cbe files/digest-prosite-19.16 67 MD5 88309b107f8fd9445fb2370e95506eff files/digest-prosite-19.17 67 -RMD160 4698c250c8d9fdf1b57ee8e7283a1cd12ee41858 files/digest-prosite-19.17 67 -SHA256 daa20d7935177e72692da67cc418684c719e7decda65e091ff1ccfafec48a7b6 files/digest-prosite-19.17 67 MD5 a652d8b43037190415fe10e9282d838f files/digest-prosite-19.18 67 -RMD160 dbda98722b5c60df16cc2520ea5bd74bde7846eb files/digest-prosite-19.18 67 -SHA256 c08859bc6f93dd250ac7e19968c31467da734c4c408ae48d59b1b9c9a8a47603 files/digest-prosite-19.18 67 MD5 db4add7ca9d25fb3c90e646c88d6f562 files/digest-prosite-19.19 67 -RMD160 46a87c396366cc756097815f2245153bc1cada79 files/digest-prosite-19.19 67 -SHA256 fd4788c8dc4520b4ffc54a20a33e73ea0cf0fceda2295860a115e6145ff39ce0 files/digest-prosite-19.19 67 MD5 9676c19817d33959f3d396ba9bd29642 files/digest-prosite-19.20 67 -RMD160 bd84a5ac854848a646a1b8ea8865c76978e301e6 files/digest-prosite-19.20 67 -SHA256 a7b26bc40e915ed2ee01677c5d52dc7b5058d2990f0b62b402d13fc0f1cfc88a files/digest-prosite-19.20 67 +MD5 ce741f14b29ee8a8a5109073ea6940be files/digest-prosite-19.22 67 MD5 81b73af5f2f4778bea2dde0b55620129 metadata.xml 810 -RMD160 a0acc8bc90197c6e5e9814044b11a02f15e4c398 metadata.xml 810 -SHA256 432b03b079022cf13e6cdbcb2455fb10ac5a95a8b3f41c63f76212a5e7f67c65 metadata.xml 810 MD5 fd8571a2c6a6d2a8c66c39dfb6bcefe2 prosite-19.16.ebuild 1240 -RMD160 45814dfb20b6f877b9952ff6ef4f68e55c6e44a2 prosite-19.16.ebuild 1240 -SHA256 0fcf024a6c3f15a5e4d7db6db4063bfd604bb9d58e9ab5fdfa489d38050c315c prosite-19.16.ebuild 1240 MD5 98de3c18be9fae196528dc1ae064a614 prosite-19.17.ebuild 1246 -RMD160 2d0794ca45fd388ec1283237db5e1088f06a5793 prosite-19.17.ebuild 1246 -SHA256 f93c4086e3fd3c6cce86fb191e1b8172e2305de3360eda55e29f064819b8759f prosite-19.17.ebuild 1246 MD5 816bdf1daa3b43ac3e34ee2e29c30266 prosite-19.18.ebuild 1241 -RMD160 5584d647a481c05bfdee2bf5d80d8fc2cc540d04 prosite-19.18.ebuild 1241 -SHA256 f09a7c61dcee87e514b871bfa41990118cf7e8fa07bb6eb5524758cbefaf161f prosite-19.18.ebuild 1241 MD5 4bc992bd06b47b580178c21734648c37 prosite-19.19.ebuild 1246 -RMD160 658320982caa1c7cde80b465e7b49d34be2392b7 prosite-19.19.ebuild 1246 -SHA256 9465431c4f32fe918b2c8f41144c1d4de5367d81814a4d56421e94d7b2fa9e43 prosite-19.19.ebuild 1246 MD5 3521d2f54ad4949ea85492479fb905c9 prosite-19.20.ebuild 1246 -RMD160 f55a25984cfb7fccec7bcba50b2693a34c2328ee prosite-19.20.ebuild 1246 -SHA256 121f3266f4330d4e88bfe7814429c38cbd99413043eb9db44099965e91658fbd prosite-19.20.ebuild 1246 +MD5 3521d2f54ad4949ea85492479fb905c9 prosite-19.22.ebuild 1246 diff --git a/sci-biology/prosite/files/digest-prosite-19.22 b/sci-biology/prosite/files/digest-prosite-19.22 new file mode 100644 index 000000000000..cde64b7bc554 --- /dev/null +++ b/sci-biology/prosite/files/digest-prosite-19.22 @@ -0,0 +1 @@ +MD5 f772e98f52e517b935ab80eec20872c8 prosite-19.22.tar.bz2 4015769 diff --git a/sci-biology/prosite/prosite-19.22.ebuild b/sci-biology/prosite/prosite-19.22.ebuild new file mode 100644 index 000000000000..1772df3cf751 --- /dev/null +++ b/sci-biology/prosite/prosite-19.22.ebuild @@ -0,0 +1,40 @@ +# Copyright 1999-2006 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-19.22.ebuild,v 1.1 2006/03/15 14:33:47 ribosome Exp $ + +DESCRIPTION="A protein families and domains database" +LICENSE="swiss-prot" +HOMEPAGE="http://ca.expasy.org/prosite" +SRC_URI="mirror://gentoo/${P}.tar.bz2" + +SLOT="0" +# Minimal build keeps only the indexed files (if applicable) and the +# documentation. The non-indexed database is not installed. +IUSE="emboss minimal" +KEYWORDS="~amd64 ~ppc ~ppc-macos ~ppc64 ~x86" + +DEPEND="emboss? ( >=sci-biology/emboss-3.0.0 )" + +src_compile() { + if use emboss; then + mkdir PROSITE + echo + einfo "Indexing PROSITE for usage with EMBOSS." + EMBOSS_DATA="." prosextract -auto -prositedir "${S}" || die \ + "Indexing PROSITE failed." + echo + fi +} + +src_install() { + if ! use minimal; then + insinto /usr/share/${PN} + doins ${PN}.{doc,dat,lis} || die "Installing raw database failed." + fi + dodoc *.txt || die "Documentation installation failed." + dohtml *.htm || die "HTML documentation installation failed." + if use emboss; then + insinto /usr/share/EMBOSS/data/PROSITE + doins PROSITE/* || die "Installing EMBOSS data files failed." + fi +} diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog index 78e576e9339f..e0a7f9cf53da 100644 --- a/sci-biology/rebase/ChangeLog +++ b/sci-biology/rebase/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/rebase # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.58 2006/02/22 21:18:22 grobian Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.59 2006/03/15 14:34:54 ribosome Exp $ + +*rebase-603 (15 Mar 2006) + + 15 Mar 2006; Olivier Fisette +rebase-603.ebuild: + New version. 22 Feb 2006; Fabian Groffen rebase-601-r1.ebuild: Marked ppc-macos stable (bug #123332) diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest index c7d28082daa6..6a15fb6a5ae0 100644 --- a/sci-biology/rebase/Manifest +++ b/sci-biology/rebase/Manifest @@ -1,24 +1,10 @@ MD5 012c0d136bf544e7f0a630e24cb3a169 ChangeLog 8187 -RMD160 2ca25390e718a124a89dfe4db09b384b93391a82 ChangeLog 8187 -SHA256 bb35f6da576d86d08cdb0de933e53d69103b3ea71731f05b118f599e39117d4e ChangeLog 8187 MD5 0327e485fe0040317dd1016583b0d76d files/digest-rebase-512 63 -RMD160 da0977a8bd82283fb9f713ada1bd99cf102261ce files/digest-rebase-512 63 -SHA256 13c140a92f51b0ea6c4901606fad7fb9f970680beee3904e9454132d699a90f7 files/digest-rebase-512 63 MD5 9b37c587b84cf914d6f9a9b616c493db files/digest-rebase-601-r1 63 -RMD160 a3685b540b325e1e6f26caf1843a07476771dd59 files/digest-rebase-601-r1 63 -SHA256 d2c68d331d68ca3431d7f39ae76cea9c6972766b24d45c68fc6cbe617d0a36e2 files/digest-rebase-601-r1 63 MD5 d652b16d7ec999abd36a1e222a7b0ca9 files/digest-rebase-602 63 -RMD160 b41adf63e5de4f2c66e32bf1d65ea0e9d2e2d736 files/digest-rebase-602 63 -SHA256 cb89e9c7f5bdf4438d4e35b0e5c6c3a1e42a8182607080b3116fcb977ef07610 files/digest-rebase-602 63 +MD5 5bd3ee69a92fe75245399d6d3ba20f42 files/digest-rebase-603 63 MD5 550f8d428f3e75690b43d32df6aa60cd metadata.xml 900 -RMD160 6124f8e0fba32951daaba2f52d7f6f0f00233b2d metadata.xml 900 -SHA256 e947dfc382096458c2183dc90fe7add203f8a6d86ccdfea668176451d58e2e7d metadata.xml 900 MD5 292928f0068bac8ab37a29c223af581e rebase-512.ebuild 1238 -RMD160 4dc23297f81069f315445fb30e652878c0722a97 rebase-512.ebuild 1238 -SHA256 ffcf6a7746df03153fe059d7ae827c61d48954905ed27d9f6bde28e1ef32bb38 rebase-512.ebuild 1238 MD5 0548120df1780978e8f3f0d6d45ed7a4 rebase-601-r1.ebuild 1358 -RMD160 5282654ca69342935bad8e46033887c4fca5ac74 rebase-601-r1.ebuild 1358 -SHA256 dae5a787f50988f7e291b37c0a677fdc73ae2864f9db2be88aa2a6f2e2a5a57d rebase-601-r1.ebuild 1358 MD5 9383effacdb187a2360dbb1112eb3ba7 rebase-602.ebuild 1360 -RMD160 61a278486d31734cb0cd0b0faa0f9b096cce90c7 rebase-602.ebuild 1360 -SHA256 f088d3941d71b53f5c1493caf6c8d9907c31e7bc976436bf62af448379f6001e rebase-602.ebuild 1360 +MD5 9383effacdb187a2360dbb1112eb3ba7 rebase-603.ebuild 1360 diff --git a/sci-biology/rebase/files/digest-rebase-603 b/sci-biology/rebase/files/digest-rebase-603 new file mode 100644 index 000000000000..2079feb0b217 --- /dev/null +++ b/sci-biology/rebase/files/digest-rebase-603 @@ -0,0 +1 @@ +MD5 2b207277228f7ee9b5f7231bac809ec2 rebase-603.tar.bz2 182746 diff --git a/sci-biology/rebase/rebase-603.ebuild b/sci-biology/rebase/rebase-603.ebuild new file mode 100644 index 000000000000..013093440312 --- /dev/null +++ b/sci-biology/rebase/rebase-603.ebuild @@ -0,0 +1,43 @@ +# Copyright 1999-2006 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-603.ebuild,v 1.1 2006/03/15 14:34:54 ribosome Exp $ + +DESCRIPTION="A restriction enzyme database" +LICENSE="public-domain" +HOMEPAGE="http://rebase.neb.com" +SRC_URI="mirror://gentoo/${P}.tar.bz2" + +SLOT="0" +# Minimal build keeps only the indexed files (if applicable) and the +# documentation. The non-indexed database is not installed. +IUSE="emboss minimal" +KEYWORDS="~x86 ~ppc ~amd64 ~ppc-macos ~ppc64" + +DEPEND="emboss? ( >=sci-biology/emboss-3.0.0-r1 )" + +src_compile() { + if use emboss; then + echo + einfo "Indexing ${PN} for usage with EMBOSS." + mkdir REBASE + EMBOSS_DATA=. rebaseextract -auto -infile withrefm.${PV} \ + -protofile proto.${PV} || die "Indexing ${PN} failed." + echo + fi +} + +src_install() { + if ! use minimal; then + insinto /usr/share/${PN} + doins withrefm.${PV} proto.${PV} || die \ + "Failed to install raw database." + fi + newdoc REBASE.DOC README || die "Failed to install documentation." + if use emboss; then + insinto /usr/share/EMBOSS/data/REBASE + doins REBASE/{embossre.enz,embossre.ref,embossre.sup} || die \ + "Failed to install EMBOSS data files." + insinto /usr/share/EMBOSS/data + doins embossre.equ || die "Failed to install enzyme prototypes file." + fi +}