From: W. Trevor King <wking@drexel.edu>
Date: Mon, 15 Mar 2010 18:07:26 +0000 (-0400)
Subject: Added \equiv to the notation list.
X-Git-Tag: v1.0~419
X-Git-Url: http://git.tremily.us/?a=commitdiff_plain;h=82833ece63acfa681f925fca2cb4306b30b09ff6;p=thesis.git

Added \equiv to the notation list.

Fixed up cantilever-data/Makefile to trigger DATA_DIRS generation.

All cantilever-data/*.sh scrips now exit on errors.
---

diff --git a/tex/src/figures/cantilever-data/Makefile b/tex/src/figures/cantilever-data/Makefile
index 510347f..f08f706 100644
--- a/tex/src/figures/cantilever-data/Makefile
+++ b/tex/src/figures/cantilever-data/Makefile
@@ -25,7 +25,8 @@ clean :
 $(DATA_DIRS) :
 	mkdir $@
 
-#data/raw : extract_f_v_k_data.sh $(DATA_DIRS)
+data/raw : extract_f_v_k_data.sh $(DATA_DIRS)
+	touch data/raw
 #	./$< > $@
 
 data/spring-constants data/averaged-data : avg_data.py data/raw
diff --git a/tex/src/figures/cantilever-data/get_v_dep.sh b/tex/src/figures/cantilever-data/get_v_dep.sh
index 91e8924..e2153ec 100755
--- a/tex/src/figures/cantilever-data/get_v_dep.sh
+++ b/tex/src/figures/cantilever-data/get_v_dep.sh
@@ -1,5 +1,8 @@
 #!/bin/bash
 
+set -e # exit immediately on failed command
+set -o pipefail # pipes fail if any stage fails
+
 KFILE='./data/spring-constants'
 AVGFILE='./data/averaged-data'
 
diff --git a/tex/src/figures/cantilever-data/make_v_dep_plots.sh b/tex/src/figures/cantilever-data/make_v_dep_plots.sh
index 1fa8087..60fa9f7 100755
--- a/tex/src/figures/cantilever-data/make_v_dep_plots.sh
+++ b/tex/src/figures/cantilever-data/make_v_dep_plots.sh
@@ -1,5 +1,8 @@
 #!/bin/bash
 
+set -e # exit immediately on failed command
+set -o pipefail # pipes fail if any stage fails
+
 KFILE='./data/spring-constants'
 AVGFILE='./data/averaged-data'
 ASYFILE='./v-dep.asy'
diff --git a/tex/src/unfolding-distributions/singledomain_constantloading.tex b/tex/src/unfolding-distributions/singledomain_constantloading.tex
index 3dfa376..3abb28a 100644
--- a/tex/src/unfolding-distributions/singledomain_constantloading.tex
+++ b/tex/src/unfolding-distributions/singledomain_constantloading.tex
@@ -9,6 +9,7 @@ Make the definitions
   D &\equiv P_0 - P && \text{the number of dead (unfolded) proteins} \\
   \kappa &\equiv -\frac{1}{P} \deriv{t}{P} && \text{the unfolding rate}
 \end{align}
+\notation{$\equiv$}{Defined as (\ie equivalent to)}
 The proteins are under constant loading because
 \begin{equation}
   \deriv{t}{F} = \deriv{x}{F}\deriv{t}{x} = kv\;,