From: Olivier Fisette <ribosome@gentoo.org>
Date: Thu, 23 Dec 2004 19:13:38 +0000 (+0000)
Subject: Moved from app-sci/primer3 to sci-biology/primer3.
X-Git-Url: http://git.tremily.us/?a=commitdiff_plain;h=7f1b7870d404f6f0233d8379f0322bba525edce7;p=gentoo.git

Moved from app-sci/primer3 to sci-biology/primer3.
---

diff --git a/sci-biology/primer3/ChangeLog b/sci-biology/primer3/ChangeLog
new file mode 100644
index 000000000000..9b5cbfe2fa71
--- /dev/null
+++ b/sci-biology/primer3/ChangeLog
@@ -0,0 +1,32 @@
+# ChangeLog for app-sci/primer3
+# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.1 2004/12/23 19:13:38 ribosome Exp $
+
+*primer3-1.0.0 (23 Dec 2004)
+
+  23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +primer3-1.0.0.ebuild:
+  Moved from app-sci/primer3 to sci-biology/primer3.
+
+  31 Oct 2004; Olivier Fisette <ribosome@gentoo.org> -primer3-0.9.ebuild,
+  primer3-1.0.0.ebuild:
+  Removed old version. Added 1.0 to x86. Fixed regression test.
+
+*primer3-1.0.0 (10 Aug 2004)
+
+  10 Aug 2004; Olivier Fisette <ribosome@gentoo.org>
+  primer3-0.9.ebuild:
+  Added to x86.
+  primer3-1.0.0.ebuild:
+  Updated package. Added regression test support.
+
+  24 Jun 2004; David Holm <dholm@gentoo.org> primer3-0.9.ebuild:
+  Added to ~ppc.
+
+*primer3-0.9 (23 Jun 2004)
+
+  23 Jun 2004; Olivier Fisette <ribosome@gentoo.org>
+  primer3-0.9.ebuild, metadata.xml :
+  Initial import.  Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>.
+  Reference: Gentoo Bugzilla, bug #54036
+
diff --git a/sci-biology/primer3/Manifest b/sci-biology/primer3/Manifest
new file mode 100644
index 000000000000..39aea177cf9f
--- /dev/null
+++ b/sci-biology/primer3/Manifest
@@ -0,0 +1,4 @@
+MD5 3dfcbfa98dcdf0382e9e6657be56eab3 primer3-1.0.0.ebuild 701
+MD5 8d47023a5fd0eb0143352ba613597cd6 ChangeLog 885
+MD5 a3a36dab6877af45d7b14ec9edea31d9 metadata.xml 713
+MD5 fc13dfb772f9bdd09bc788514faa4abe files/digest-primer3-1.0.0 65
diff --git a/sci-biology/primer3/files/digest-primer3-1.0.0 b/sci-biology/primer3/files/digest-primer3-1.0.0
new file mode 100644
index 000000000000..e6dbc9a3f602
--- /dev/null
+++ b/sci-biology/primer3/files/digest-primer3-1.0.0
@@ -0,0 +1 @@
+MD5 58605ee607f6218a2a775345b10d15fa primer3_1.0.0.tar.gz 936696
diff --git a/sci-biology/primer3/metadata.xml b/sci-biology/primer3/metadata.xml
new file mode 100644
index 000000000000..c4e1042f1c19
--- /dev/null
+++ b/sci-biology/primer3/metadata.xml
@@ -0,0 +1,17 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>ribosome@gentoo.org</email>
+		<name>Olivier Fisette</name>
+	</maintainer>
+	<herd>sci</herd>
+	<longdescription>
+		Primer3 picks primers for PCR reactions, considering: oligonucleotide
+		melting temperature, size, GC content, and primer-dimer possibilities;
+		PCR product size; positional constraints within the source sequence;
+		and miscellaneous other constraints. All of these criteria are
+		user-specifiable as constraints, and some are specifiable as terms in
+		an objective function that characterizes an optimal primer pair.
+	</longdescription>
+</pkgmetadata>
diff --git a/sci-biology/primer3/primer3-1.0.0.ebuild b/sci-biology/primer3/primer3-1.0.0.ebuild
new file mode 100644
index 000000000000..072ff0107e69
--- /dev/null
+++ b/sci-biology/primer3/primer3-1.0.0.ebuild
@@ -0,0 +1,32 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/primer3-1.0.0.ebuild,v 1.1 2004/12/23 19:13:38 ribosome Exp $
+
+DESCRIPTION="Design primers for PCR reactions."
+HOMEPAGE="http://frodo.wi.mit.edu/primer3/primer3_code.html"
+SRC_URI="http://frodo.wi.mit.edu/${PN}/${PN}_${PV}.tar.gz"
+LICENSE="whitehead"
+
+SLOT="0"
+KEYWORDS="x86 ~ppc"
+IUSE=""
+
+RDEPEND=""
+
+DEPEND="dev-lang/perl"
+
+S=${WORKDIR}/${PN}_${PV}/src
+
+src_compile() {
+	emake -e || die
+}
+
+src_test () {
+	cd ../test
+	perl primer_test.pl primer3_core || die
+}
+
+src_install () {
+	dobin primer3_core
+	dodoc release_notes ../README ../example
+}