From: W. Trevor King <wking@drexel.edu>
Date: Thu, 14 Oct 2010 13:58:59 +0000 (-0400)
Subject: Add examples/Marszalek_Fernandez_1999/titin_intermediate.sh.
X-Git-Url: http://git.tremily.us/?a=commitdiff_plain;h=722cc30f3d2c0ffe228518652ea8571f983efad3;p=sawsim.git

Add examples/Marszalek_Fernandez_1999/titin_intermediate.sh.
---

diff --git a/examples/Marszalek_Fernandez_1999/titin_intermediate.sh b/examples/Marszalek_Fernandez_1999/titin_intermediate.sh
new file mode 100644
index 0000000..6004a1d
--- /dev/null
+++ b/examples/Marszalek_Fernandez_1999/titin_intermediate.sh
@@ -0,0 +1,17 @@
+#!/bin/bash
+
+# rediculous parameters, but it vaguely resembles the Titin shoulder
+# from Marszalek...Fernandez 1999, "Mechanical unfolding intermediates
+# in titin modules.", Nature (402), 6757 p100.
+
+sawsim -v1e-6 \
+  -s cantilever,hooke,0.05 -N1 \
+  -s folded,null -N8 \
+  -s 'transition,wlc,{0.39e-9,1e-9}' \
+  -s 'unfolded,wlc,{0.39e-9,28e-9}' \
+  -s 'cantbind,null' -N1 \
+  -k 'folded,transition,bell,{1e-12,1e-9}' \
+  -k 'transition,folded,bell,{1e8,-1e-9}' \
+  -k 'transition,unfolded,bell,{3.3e-4,0.25e-9}' \
+  -k 'cantbind,unfolded,bell,{3.3e-6,0.25e-9}' \
+  -q cantbind -V