From: W. Trevor King <wking@tremily.us>
Date: Tue, 21 May 2013 21:42:53 +0000 (-0400)
Subject: sawsim/methods.tex: Make C and Python references citations
X-Git-Tag: v1.0~146
X-Git-Url: http://git.tremily.us/?a=commitdiff_plain;h=710752d733f7d636a68d42bc03d4b53e7c0e5a91;p=thesis.git

sawsim/methods.tex: Make C and Python references citations

This is their first occurence in this section.  Mom thinks that some
folks may not have heard of C! ;)
---

diff --git a/src/local_cmmds.tex b/src/local_cmmds.tex
index 4603e88..a8562fd 100644
--- a/src/local_cmmds.tex
+++ b/src/local_cmmds.tex
@@ -165,6 +165,7 @@
 \defcitealias{h5config}{h5config}
 \defcitealias{hdf5}{HDF5}
 \defcitealias{interix}{Interix}
+\defcitealias{kernighan88}{C}
 \defcitealias{king10}{sawsim}
 \defcitealias{labview}{LabVIEW}
 \defcitealias{picoforce}{PicoForce}
diff --git a/src/sawsim/methods.tex b/src/sawsim/methods.tex
index 951c327..d513d73 100644
--- a/src/sawsim/methods.tex
+++ b/src/sawsim/methods.tex
@@ -9,10 +9,12 @@ obtained by balancing the tension in the protein polymer and the
 Hookean force of the bent cantilever.  The unfolding probability of
 the protein molecules in the polymer is then calculated for that
 tension, and whether an unfolding event occurs is determined according
-to a Monte Carlo method.  The simulation was implemented in C, and
-there are a number of Python modules to facilitate running several
-simulations in parallel\footnote{Source code available at
-  \url{http://blog.tremily.us/posts/sawsim/}}.
+to a Monte Carlo method.  The simulation was implemented in
+\citetalias{kernighan88}, and there are a number of
+\citetalias{python} modules to facilitate running several simulations
+in parallel\footnote{
+  Source code available at \url{http://blog.tremily.us/posts/sawsim/}.
+}.
 
 In the following sections, we'll discuss models used to determine the
 tension of a chain composed of several types of ``domains'' (e.g.~one