From: W. Trevor King <wking@drexel.edu>
Date: Fri, 22 Apr 2011 10:44:13 +0000 (-0400)
Subject: Flesh out sawsim page with the fit-space figure.
X-Git-Url: http://git.tremily.us/?a=commitdiff_plain;h=64fb484e28cc088c34c45bbb8f5ccc618333a2a4;p=mw2txt.git

Flesh out sawsim page with the fit-space figure.
---

diff --git a/posts/sawsim.mdwn b/posts/sawsim.mdwn
index a7d5a83..a057fbd 100644
--- a/posts/sawsim.mdwn
+++ b/posts/sawsim.mdwn
@@ -27,8 +27,15 @@ actually going on behind the scenes.  Sawsim is my ([published][]!)
 tool for simulating force spectroscopy experiments and matching the
 simulations to experimental results.
 
-[AFM]: http://en.wikipedia.org/wiki/Atomic_force_microscopy
-[published]: http://dx.doi.org/10.1016/j.ijbiomac.2009.12.001
+The main benefits of sawsim are its ability to simulate systems with
+arbitrary numbers of states (see the [[manual|sawsim.pdf]] and to
+easily compare the simulated data with experimental values.  The
+following figure shows a long valley of reasonable fits to some
+ubiquitin unfolding data.  See the IJBM paper (linked above) for more
+details.
+
+[[!img fit-space.png alt="Fit space Surface bump for photodiode sensitivity"
+  title="Surface bump for photodiode sensitivity" ]]
 
 
 Getting started
@@ -44,6 +51,8 @@ and want to try installing Sawsim).
 See the [[README]], [[manual|sawsim.pdf]], and [PyPI page][pypi] for
 more details.
 
+[AFM]: http://en.wikipedia.org/wiki/Atomic_force_microscopy
+[published]: http://dx.doi.org/10.1016/j.ijbiomac.2009.12.001
 [pypi]: http://pypi.python.org/pypi/pysawsim/
 
 [[!tag tags/C]]
diff --git a/posts/sawsim/fit-space.png b/posts/sawsim/fit-space.png
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index 0000000..0c98f57
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