From: Justin Lecher Date: Sat, 27 Mar 2010 08:49:17 +0000 (+0000) Subject: New Ebuild requested per bug 309737 X-Git-Url: http://git.tremily.us/?a=commitdiff_plain;h=49c77ca1c964a0a2c73d12540a496f25d57c76af;p=gentoo.git New Ebuild requested per bug 309737 Package-Manager: portage-2.2_rc67/cvs/Linux x86_64 --- diff --git a/sci-chemistry/pymol-plugins-ezviz/ChangeLog b/sci-chemistry/pymol-plugins-ezviz/ChangeLog new file mode 100644 index 000000000000..8f4cb05944ba --- /dev/null +++ b/sci-chemistry/pymol-plugins-ezviz/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-chemistry/pymol-plugins-ezviz +# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-ezviz/ChangeLog,v 1.1 2010/03/27 08:49:17 jlec Exp $ + +*pymol-plugins-ezviz-1.0.2005 (27 Mar 2010) + + 27 Mar 2010; Justin Lecher (jlec) + +pymol-plugins-ezviz-1.0.2005.ebuild, +files/gentoo.patch, +metadata.xml: + New Ebuild requested per 309737 + diff --git a/sci-chemistry/pymol-plugins-ezviz/Manifest b/sci-chemistry/pymol-plugins-ezviz/Manifest new file mode 100644 index 000000000000..5f1d3b3581f4 --- /dev/null +++ b/sci-chemistry/pymol-plugins-ezviz/Manifest @@ -0,0 +1,15 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + +AUX gentoo.patch 4616 RMD160 d74f901b5e6b7844b92d93d93ce1ad4ee3950536 SHA1 8a96fabf2fb8b15c24b27bcba4382a10b769657c SHA256 3e96d68e75f3f6d75bc824daab2d025e58c6184809eb307d802bfbdb53341494 +DIST pymol-plugins-ezviz-1.0.2005.zip 137431 RMD160 1f36f033d5020acccc6b4f7612a934b004fe95f9 SHA1 7ac2ee87a6d25c5a5b8b55b8e88c2cf624a6c54a SHA256 742c18d338ccc0567203c122a5f7ce0f903bf3247f7620337828d9dd5ae4f008 +EBUILD pymol-plugins-ezviz-1.0.2005.ebuild 1372 RMD160 2dd7fcbf1742972e3e2903ff8e4302927fc8c953 SHA1 2fefa31555bd8d35e5b7b4fb51fcaf728bdf312b SHA256 643bb009d4d7cfaba9a05fa8ee8db5209ac2f977476d445d889214b2d4a2c40f +MISC ChangeLog 447 RMD160 f3abcddf29c6187756262a71994f6244e58a7d8d SHA1 646b397be16bf78c13efe89141081470864bf693 SHA256 7343f2099f25e2440cda010871861eec0f19f1efbe4ca071c335276a6535f2d7 +MISC metadata.xml 734 RMD160 eab17443806462e202717773dfc67e69cd542e6e SHA1 f27a731f0f4915847c3cf13d43fd850f01816332 SHA256 6119764c7548a12529bd04d76aa119c4cefa59d61ec4954ae6e895a564f257ae +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v2.0.14 (GNU/Linux) + +iEYEARECAAYFAkutxpQACgkQgAnW8HDreRYlvQCfTz6Zz6omI1MW7+3B9viAy8Yi +KZ8AoJmbUuMFuQ8vLUpHFS+5RZuxnm2k +=ojpN +-----END PGP SIGNATURE----- diff --git a/sci-chemistry/pymol-plugins-ezviz/files/gentoo.patch b/sci-chemistry/pymol-plugins-ezviz/files/gentoo.patch new file mode 100644 index 000000000000..ba28af325c21 --- /dev/null +++ b/sci-chemistry/pymol-plugins-ezviz/files/gentoo.patch @@ -0,0 +1,85 @@ +diff --git a/ez-viz.py b/ez-viz.py +index 1d8e847..8d50e6b 100755 +--- a/ez-viz.py ++++ b/ez-viz.py +@@ -363,27 +363,27 @@ class PGUI: + global splash + + # Images used in Presets tab +- defaultImage = PhotoImage( file="modules\pmg_tk\startup\default.gif") +- chains = PhotoImage(file="modules\pmg_tk\startup\chains.GIF") +- heteroImg = PhotoImage(file="modules\pmg_tk\startup\heteroAtom.GIF") +- ballStickImg = PhotoImage(file="C:\Program Files\DeLano Scientific\PyMOL\modules\pmg_tk\startup\showBallStick.GIF") +- surfaceImg = PhotoImage(file="modules\pmg_tk\startup\surface.GIF") +- polarityImg = PhotoImage(file="modules\pmg_tk\startup\polarity.GIF") +- puttyImg = PhotoImage(file="modules\pmg_tk\startup\putty.GIF") +- aromaticsImg = PhotoImage(file="modules\pmg_tk\startup\showAromatics.GIF") +- dnaImg = PhotoImage(file="modules\pmg_tk\startup\dna.GIF") ++ defaultImage = PhotoImage( file="GENTOOPYMOL/pmg_tk/startup/ez-viz/default.gif") ++ chains = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/chains.gif") ++ heteroImg = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/heteroAtom.gif") ++ ballStickImg = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/showBallStick.gif") ++ surfaceImg = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/surface.gif") ++ polarityImg = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/polarity.gif") ++ puttyImg = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/putty.gif") ++ aromaticsImg = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/showAromatics.gif") ++ dnaImg = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/dna.gif") + + # Movie tab images +- ligand = PhotoImage(file="modules\pmg_tk\startup\zoom.GIF") +- build = PhotoImage(file="modules\pmg_tk\startup\prot.GIF") +- chainsMovieImg = PhotoImage(file="modules\pmg_tk\startup\chainsMovie.GIF") +- rotateImg = PhotoImage(file="modules\pmg_tk\startup\Rotate.GIF") +- playButton = PhotoImage(file="modules\pmg_tk\startup\play.GIF") +- stopButton = PhotoImage(file="modules\pmg_tk\startup\stop.GIF") +- rewindButton = PhotoImage(file="modules\pmg_tk\startup\Rewind.GIF") ++ ligand = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/zoom.gif") ++ build = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/prot.gif") ++ chainsMovieImg = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/chainsMovie.gif") ++ rotateImg = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/Rotate.gif") ++ playButton = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/play.gif") ++ stopButton = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/stop.gif") ++ rewindButton = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/Rewind.gif") + + # Welcome tab image +- splash = PhotoImage(file="modules\pmg_tk\startup\splash.GIF") ++ splash = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/splash.gif") + #--------------------------------------# + # # + # PRESETS METHODS # +@@ -1035,7 +1035,7 @@ class PGUI: + if tkMessageBox.askyesno('Ray Trace Image', "Do you want to ray trace you image before saving it? Depending on your image "+ + "this make take a few minutes if you select yes."): + cmd.ray() +- file = tkFileDialog.asksaveasfilename(defaultextension=".png", initialdir="C:/Program Files/DeLano Scientific/PyMOL/") ++ file = tkFileDialog.asksaveasfilename(defaultextension=".png", initialdir="./") + if len(file)>0: + cmd.save(file) + +@@ -1045,7 +1045,7 @@ class PGUI: + import tkFileDialog + import tkMessageBox + +- file = tkFileDialog.asksaveasfilename(defaultextension=".pse", initialdir='C:/Program Files/Delano Scientific/PyMOL/') ++ file = tkFileDialog.asksaveasfilename(defaultextension=".pse", initialdir='./') + print file + if len(file)>0: + cmd.save(file) +@@ -1574,7 +1574,7 @@ class PGUI: + #------Open Help File---------# + def help(self): + import webbrowser +- webbrowser.open('modules\pmg_tk\startup\Help\EZ-VizWebMain.html') ++ webbrowser.open('GENTOOPYMOL/pmg_tk/startup/ez-vizHelp\EZ-VizWebMain.html') + + #---------------------------------------------------------------# + # # +@@ -2188,7 +2188,7 @@ class PGUI: + import tkFileDialog + + if result == 'Open': +- file=tkFileDialog.askopenfilename(initialdir='C:/Documents and Settings/Administrator/My Documents/') ++ file=tkFileDialog.askopenfilename(initialdir='./') + if file: + cmd.load(file) + self.pdbCode = file diff --git a/sci-chemistry/pymol-plugins-ezviz/metadata.xml b/sci-chemistry/pymol-plugins-ezviz/metadata.xml new file mode 100644 index 000000000000..bfccced9410e --- /dev/null +++ b/sci-chemistry/pymol-plugins-ezviz/metadata.xml @@ -0,0 +1,18 @@ + + +sci-chemistry + + jlec@gentoo.org + + + EZ-Viz was developed as an assistance tool for the difficult to + understand user interface of PyMOL. The standard interface is + very complex takes a long time to learn, especially for students + unfamiliar with the chemistry and busy researchers with little + time to learn the commands necessary to use the PyMOL software + to its full extent. EZ-Viz allows for users to navigate through + PyMOL using a series of clickable buttons and tabs to complete + all functions of the PyMol software without ever having to type + a single command. + + diff --git a/sci-chemistry/pymol-plugins-ezviz/pymol-plugins-ezviz-1.0.2005.ebuild b/sci-chemistry/pymol-plugins-ezviz/pymol-plugins-ezviz-1.0.2005.ebuild new file mode 100644 index 000000000000..eecaef8837f7 --- /dev/null +++ b/sci-chemistry/pymol-plugins-ezviz/pymol-plugins-ezviz-1.0.2005.ebuild @@ -0,0 +1,63 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-ezviz/pymol-plugins-ezviz-1.0.2005.ebuild,v 1.1 2010/03/27 08:49:17 jlec Exp $ + +EAPI="3" + +SUPPORT_PYTHON_ABIS="1" + +inherit eutils python + +DESCRIPTION="assistance tool for the difficult to understand user interface of PyMOL" +HOMEPAGE="http://www.rit.edu/cos/ezviz/index.html" +SRC_URI=" + mirror://gentoo/${P}.zip + mirror://gentoo/${P}.zip" + +SLOT="0" +KEYWORDS="~amd64 ~x86" +LICENSE="as-is" +IUSE="doc" + +RDEPEND="sci-chemistry/pymol" +DEPEND=" + app-arch/unzip + ${RDEPEND}" + +RESTRICT_PYTHON_ABIS="3.*" + +S="${WORKDIR}/EZ_Viz Folder" + +src_prepare() { + edos2unix ez-viz.py + python_copy_sources + preperation() { + epatch "${FILESDIR}"/gentoo.patch + sed \ + -e "s:GENTOOPYMOL:${EPREFIX}/$(python_get_sitedir):g" \ + -i ez-viz.py || die + } + python_execute_function -s preperation +} + +src_install() { + installation() { + insinto $(python_get_sitedir)/pmg_tk/startup/ + doins *.py || die + insinto $(python_get_sitedir)/pmg_tk/startup/ez-viz/ + doins *.gif || die + for gif in *.GIF; do + newins ${gif} ${gif/.GIF/.gif} || die + done + } + python_execute_function -s installation + dodoc readme.txt || die +} + +pkg_postinst() { + python_mod_optimize pmg_tk/startup +} + +pkg_postrm() { + python_mod_cleanup pmg_tk/startup +}