From: Olivier Fisette <ribosome@gentoo.org>
Date: Thu, 23 Dec 2004 21:20:54 +0000 (+0000)
Subject: Moving to sci-biology/prints
X-Git-Url: http://git.tremily.us/?a=commitdiff_plain;h=23cc564644d83b8e437ad8bd334348426bb23a90;p=gentoo.git

Moving to sci-biology/prints
---

diff --git a/app-sci/prints/ChangeLog b/app-sci/prints/ChangeLog
deleted file mode 100644
index 0f9343389ad1..000000000000
--- a/app-sci/prints/ChangeLog
+++ /dev/null
@@ -1,17 +0,0 @@
-# ChangeLog for app-sci/prints
-# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/prints/ChangeLog,v 1.4 2004/08/10 23:58:04 ribosome Exp $
-
-  10 Aug 2004; Olivier Fisette <ribosome@gentoo.org> prints-37.0.ebuild:
-  Added to x86.
-
-  26 Jun 2004; David Holm <dholm@gentoo.org> prints-37.0.ebuild:
-  Added to ~ppc.
-
-*prints-37.0 (24 Jun 2004)
-
-  24 Jun 2004; Olivier Fisette <ribosome@gentoo.org>
-  prints-37.0.ebuild, metadata.xml :
-  Initial import.  Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>.
-  Reference: Gentoo Bugzilla, bug #54325
-
diff --git a/app-sci/prints/Manifest b/app-sci/prints/Manifest
deleted file mode 100644
index b56d62f75dfb..000000000000
--- a/app-sci/prints/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-MD5 1c8d284adadedde34a18685c9c62e6a7 prints-37.0.ebuild 1406
-MD5 9ac779989e13cec1b5bd6b77ff3ead74 ChangeLog 614
-MD5 1ac1b9a7f4647c51e178fee97f2e8fa8 metadata.xml 876
-MD5 480ec57dbfe7db281e30726e6e1160bd files/digest-prints-37.0 365
diff --git a/app-sci/prints/files/digest-prints-37.0 b/app-sci/prints/files/digest-prints-37.0
deleted file mode 100644
index 660c4ee3c1ef..000000000000
--- a/app-sci/prints/files/digest-prints-37.0
+++ /dev/null
@@ -1,6 +0,0 @@
-MD5 8d15b420f8fb946085364b95550557c9 newpr.lis.gz 1446
-MD5 0b250e6966d83573609d6afe3f6442ce prints37_0.all.fasta.Z 19434403
-MD5 750992359d84739bf9d08894271c34ad prints37_0.dat.gz 7145345
-MD5 4b25791302554f8ea87358156b2b6b89 prints37_0.lis.gz 30354
-MD5 72215bb4d79ba0e2503ecb6614f74834 prints37_0.nam.gz 584
-MD5 2472d9ba65b3bfc4cd054f18d5b26a67 prints37_0.vsn.gz 73
diff --git a/app-sci/prints/metadata.xml b/app-sci/prints/metadata.xml
deleted file mode 100644
index 4d3ac3ee6b21..000000000000
--- a/app-sci/prints/metadata.xml
+++ /dev/null
@@ -1,20 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer>
-		<email>ribosome@gentoo.org</email>
-		<name>Olivier Fisette</name>
-	</maintainer>
-	<herd>sci</herd>
-	<longdescription>
-		A protein motif fingerprint database maintained at the University of
-		Manchester. A fingerprint is a group of conserved motifs used to
-		characterise a protein family; its diagnostic power is refined by
-		iterative scanning of a SWISS-PROT/TrEMBL composite. Usually the motifs
-		do not overlap, but are separated along a sequence, though they may be
-		contiguous in 3D-space. Fingerprints can encode protein folds and
-		functionalities more flexibly and powerfully than can single motifs,
-		full diagnostic potency deriving from the mutual context provided by
-		motif neighbours.
-	</longdescription>
-</pkgmetadata>
diff --git a/app-sci/prints/prints-37.0.ebuild b/app-sci/prints/prints-37.0.ebuild
deleted file mode 100644
index bd11eb1215bd..000000000000
--- a/app-sci/prints/prints-37.0.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 1999-2004 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/prints/prints-37.0.ebuild,v 1.4 2004/08/10 23:58:04 ribosome Exp $
-
-DESCRIPTION="A protein motif fingerprint database"
-HOMEPAGE="http://www.bioinf.man.ac.uk/dbbrowser/PRINTS/"
-SRC_URI="ftp://ftp.ebi.ac.uk/pub/databases/${PN}/newpr.lis.gz
-	ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}37_0.all.fasta.Z
-	ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}37_0.dat.gz
-	ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}37_0.lis.gz
-	ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}37_0.nam.gz
-	ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}37_0.vsn.gz"
-LICENSE="public-domain"
-SLOT="0"
-KEYWORDS="x86 ~ppc"
-IUSE="no-emboss no-rawdb"
-
-S=${WORKDIR}
-
-src_compile() {
-	# Index the database for use with emboss if emboss is installed and
-	# the user did not explicitly request not to index the database.
-	if [ -e /usr/bin/printsextract ] && ! use no-emboss; then
-		mkdir PRINTS
-		einfo "Indexing PRINTS for usage with EMBOSS."
-		EMBOSS_DATA=. printsextract -auto -infile prints37_0.dat || die \
-			"Indexing PRINTS failed."
-	fi
-}
-
-src_install() {
-	if ! use no-rawdb; then
-		insinto /usr/share/${PN}
-		doins ${PN}37_0.{all.fasta,dat,lis,nam,vsn} newpr.lis
-	fi
-	if [ -e /usr/bin/printsextract ] && ! use no-emboss; then
-		insinto /usr/share/EMBOSS/data/PRINTS
-		doins PRINTS/*
-	fi
-}