From: Olivier Fisette <ribosome@gentoo.org>
Date: Thu, 23 Dec 2004 21:27:22 +0000 (+0000)
Subject: Moving to sci-biology/transfac
X-Git-Url: http://git.tremily.us/?a=commitdiff_plain;h=1b83a769206eb265e619b71223ab4f0a48c173ce;p=gentoo.git

Moving to sci-biology/transfac
---

diff --git a/app-sci/transfac/ChangeLog b/app-sci/transfac/ChangeLog
deleted file mode 100644
index d9dd973f84d1..000000000000
--- a/app-sci/transfac/ChangeLog
+++ /dev/null
@@ -1,17 +0,0 @@
-# ChangeLog for app-sci/transfac
-# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/transfac/ChangeLog,v 1.4 2004/08/10 23:59:06 ribosome Exp $
-
-  10 Aug 2004; Olivier Fisette <ribosome@gentoo.org> transfac-3.2.ebuild:
-  Added to x86.
-
-  26 Jun 2004; David Holm <dholm@gentoo.org> transfac-3.2.ebuild:
-  Added to ~ppc.
-
-*transfac-3.2 (24 Jun 2004)
-
-  24 Jun 2004; Olivier Fisette <ribosome@gentoo.org>
-  transfac-3.2.ebuild, metadata.xml :
-  Initial import.  Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>.
-  Reference: Gentoo Bugzilla, bug #54327
-
diff --git a/app-sci/transfac/Manifest b/app-sci/transfac/Manifest
deleted file mode 100644
index 6e900a842052..000000000000
--- a/app-sci/transfac/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-MD5 3c9b1ebb3d435b4a7c3f1c137f2dbf8c transfac-3.2.ebuild 1057
-MD5 7727d5d43b0f52c12b63ce5251a8ef3d ChangeLog 622
-MD5 504b628559ecce77f74357602454a570 metadata.xml 689
-MD5 e3812a0e0572b70737cef505b921a8fc files/digest-transfac-3.2 62
diff --git a/app-sci/transfac/files/digest-transfac-3.2 b/app-sci/transfac/files/digest-transfac-3.2
deleted file mode 100644
index 6317944480de..000000000000
--- a/app-sci/transfac/files/digest-transfac-3.2
+++ /dev/null
@@ -1 +0,0 @@
-MD5 f65c3263ff45f1f69bc76caa0e0705ec transfac32.tar.Z 3346266
diff --git a/app-sci/transfac/metadata.xml b/app-sci/transfac/metadata.xml
deleted file mode 100644
index 870758f3ac92..000000000000
--- a/app-sci/transfac/metadata.xml
+++ /dev/null
@@ -1,17 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer>
-		<email>ribosome@gentoo.org</email>
-		<name>Olivier Fisette</name>
-	</maintainer>
-	<herd>sci</herd>
-	<longdescription>
-		TRANSFAC® is a database of eukaryotic transcription factors, of their
-		genomic binding sites and DNA-binding profiles. TRANSFAC 3.2 is an old
-		public version available at the European Bioinformatics Institute.
-		TRANSFAC® is currently maintained by the BIOBASE company. Altough they
-		offer public access to a more recent version of the database, they
-		offer no free downloadable version.
-	</longdescription>
-</pkgmetadata>
diff --git a/app-sci/transfac/transfac-3.2.ebuild b/app-sci/transfac/transfac-3.2.ebuild
deleted file mode 100644
index 97d955afee80..000000000000
--- a/app-sci/transfac/transfac-3.2.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2004 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/transfac/transfac-3.2.ebuild,v 1.4 2004/08/10 23:59:06 ribosome Exp $
-
-DESCRIPTION="A database of eucaryotic transcription factors"
-HOMEPAGE="http://www.gene-regulation.com/pub/databases.html"
-SRC_URI="ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}32.tar.Z"
-LICENSE="public-domain"
-
-SLOT="3"
-KEYWORDS="x86 ~ppc"
-IUSE="no-emboss no-rawdb"
-
-S=${WORKDIR}
-
-src_compile() {
-	# Index the database for use with emboss if emboss is installed and
-	# the user did not explicitly request not to index the database.
-	if [ -e /usr/bin/tfextract ] && ! use no-emboss; then
-		einfo "Indexing TRANSFAC for usage with EMBOSS."
-		EMBOSS_DATA=. tfextract -auto -infile class.dat  || die \
-			"Indexing TRANSFAC failed."
-	fi
-}
-
-src_install() {
-	if ! use no-rawdb; then
-		insinto /usr/share/${PN}-${SLOT}
-		doins *.dat
-	fi
-	if [ -e /usr/bin/tfextract ] && ! use no-emboss; then
-		insinto /usr/share/EMBOSS/data
-		doins tf*
-	fi
-}