# ChangeLog for sci-chemistry/prodecomp
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prodecomp/ChangeLog,v 1.1 2010/10/20 06:25:57 jlec Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prodecomp/ChangeLog,v 1.2 2015/04/15 14:18:54 jlec Exp $
+
+ 15 Apr 2015; Justin Lecher <jlec@gentoo.org> metadata.xml,
+ prodecomp-3.0.ebuild:
+ Drop old; Bump EAPI and python eclasses
*prodecomp-3.0 (20 Oct 2010)
20 Oct 2010; Justin Lecher <jlec@gentoo.org> +prodecomp-3.0.ebuild,
+metadata.xml:
Initital addition
-
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+EBUILD prodecomp-3.0.ebuild 1137 SHA256 307230275b60e817fdb232c757e7550b09bcee7fcce01a1cd34f9d4d7d9758f2 SHA512 0839d682e219e1f743304ed8064c96f89f7cd2bcf76d4cffb289c095a215275ed921931a3ed23d7d26d8f74caa1be6bdd0df1fd8d2b65d586ef54e662a4d3931 WHIRLPOOL e84192df828efab985a7a7ea4e530174f25203ffab9c4e18ea48af7cec0da32bfc8a669ea6e745ad7365563efc37eb0261761c3f80b422196a15b24af7c3a5fb
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<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
-<herd>sci-chemistry</herd>
-<maintainer>
- <email>jlec@gentoo.org</email>
-</maintainer>
-<longdescription>
+ <herd>sci-chemistry</herd>
+ <maintainer>
+ <email>jlec@gentoo.org</email>
+ </maintainer>
+ <longdescription>
PRODECOMP (PROjection DECOMPosition) is a software tool for
decomposition of 2D projections of high-dimensional NMR spectra to a set
of components (defined in turn by one-dimensional "shapes").
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prodecomp/prodecomp-3.0.ebuild,v 1.1 2010/10/20 06:25:57 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prodecomp/prodecomp-3.0.ebuild,v 1.2 2015/04/15 14:18:54 jlec Exp $
-EAPI="3"
+EAPI=5
-PYTHON_DEPEND="2"
-PYTHON_USE_WITH="tk"
+PYTHON_COMPAT=( python2_7 )
+PYTHON_REQ_USE="tk"
-inherit python
+inherit python-single-r1
DESCRIPTION="Decomposition-based analysis of NMR projections"
HOMEPAGE="http://www.lundberg.gu.se/nmr/software.php?program=PRODECOMP"
SRC_URI="mirror://gentoo/${P}.tar.bz2"
SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
LICENSE="GPL-2"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="examples"
-RDEPEND="sci-libs/scipy"
+RDEPEND="sci-libs/scipy[${PYTHON_USEDEP}]"
DEPEND=""
S="${WORKDIR}"/NMRProjAnalys
-pkg_setup() {
- python_set_active_version 2
- python_pkg_setup
-}
-
src_install() {
if use examples; then
insinto /usr/share/${PN}
- doins -r ExampleData Results || die
+ doins -r ExampleData Results
fi
- insinto /usr/share/doc/${PF}
- doins ProjTools/Manual.pdf || die
+ dodoc ProjTools/Manual.pdf
rm -rf ProjTools/Manual.pdf ProdecompOutput || die
- insinto $(python_get_sitedir)
- doins -r ProjTools || die
- mv "${ED}"/$(python_get_sitedir)/{ProjTools,${PN}} || die
+ python_moduleinto ${PN}
+ python_domodule ProjTools/.
+ python_optimize
cat >> "${T}"/${PN} <<- EOF
#!/bin/bash
- $(PYTHON) -O "${EPREFIX}"/$(python_get_sitedir)/${PN}/ProjAnalys.py $@
+ ${PYTHON} -O "${EPREFIX}"/$(python_get_sitedir)/${PN}/ProjAnalys.py $@
EOF
- dobin "${T}"/${PN} || die
+ dobin "${T}"/${PN}
dosym ../../../../share/doc/${PF}/Manual.pdf $(python_get_sitedir)/${PN}/Manual.pdf
}
# ChangeLog for sci-chemistry/pymol-plugins-caver
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-caver/ChangeLog,v 1.1 2011/03/18 10:22:58 jlec Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-caver/ChangeLog,v 1.2 2015/04/15 14:14:33 jlec Exp $
+
+ 15 Apr 2015; Justin Lecher <jlec@gentoo.org>
+ -pymol-plugins-caver-2.1.1.ebuild, metadata.xml,
+ pymol-plugins-caver-2.1.2.ebuild:
+ Drop old; Bump EAPI and python eclasses
*pymol-plugins-caver-2.1.2 (18 Mar 2011)
*pymol-plugins-caver-2.1.1 (18 Mar 2011)
+metadata.xml:
Moved from sci-chemistry/caver to sci-chemistry/pymol-plugins-caver, Version
Bump
-
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-Hash: SHA1
-
-DIST Caver2_1_1_pymol_plugin.zip 5695137 RMD160 205cc36a040b7dcc1112e2e747d4d0c97806c285 SHA1 a7a2849c75074f596bb583d90679e96356622cda SHA256 367e3e37569219ef011d769e9109897c3e26a870a94e9132480768c027571da3
-DIST Caver2_1_2_pymol_plugin.zip 5698331 RMD160 497c21bd26e20af77d2504b128f35e51e7852e1b SHA1 caac1f15716e5cc0888df7d6f017152cedeb7dc9 SHA256 1dcc61ba13247c05710c4cd68491d0c867ce1d0c11c824be85a516250b2874e3
-EBUILD pymol-plugins-caver-2.1.1.ebuild 1558 RMD160 793758f496d45ce1984dd777c0045715a0ab8928 SHA1 5cde71c9dfae5a26698b17a4ec4518fc3c4118db SHA256 45c363d0f0aa6b927ddd61af1d5e7f57e7bc58694684b51ec6efbc9b6af11c6b
-EBUILD pymol-plugins-caver-2.1.2.ebuild 1558 RMD160 5cb73d2472587ce1944615834f19b42ded063913 SHA1 081aac0da9e31d8005b22f512074f9626ae1d12a SHA256 2bc55ae57121147251fcd0869879fd15cf257c4b143d7cd5e6080549308b2f66
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+DIST Caver2_1_2_pymol_plugin.zip 5698331 SHA256 1dcc61ba13247c05710c4cd68491d0c867ce1d0c11c824be85a516250b2874e3 SHA512 9d28e059bb20f30cf6a0d25ed2eb080dcf9dbb753e9d4578d95e293b31c5cf5fe23d5177dccdb79c192ab3e65bb484b6eb22b26c267637b125404f871e01a52c WHIRLPOOL 33e6893d2114b5ce197fc098d09dfc67ce88f38741e30f1fa574873836c636b5e0c180301849fd98f1f93de5ce51554d2245d0bd615b938d39a802e91e68ebb9
+EBUILD pymol-plugins-caver-2.1.2.ebuild 1372 SHA256 a719202b8bdfbb8cba9a4cb5d5f083660b59ba5cbfc415693c5ca1f58c514e0b SHA512 e9a1a179b30a932e7faed158b92a174c9a037a79f336ce6b369b851bf7dca59ac387fd95404afae630765784bf945b41ecc8644123d78fc43a62167b61facdfe WHIRLPOOL a4997ff09b2fc9a050706ed25961600743dab1d801419628d52e50edcc0ec23c049163c232d85173e0194323b38d312114f252d0c775d05daf47cc0d8e287f08
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<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
-<herd>sci-chemistry</herd>
+ <herd>sci-chemistry</herd>
</pkgmetadata>
+++ /dev/null
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-caver/pymol-plugins-caver-2.1.1.ebuild,v 1.1 2011/03/18 10:22:58 jlec Exp $
-
-EAPI="3"
-
-SUPPORT_PYTHON_ABIS="1"
-RESTRICT_PYTHON_ABIS="2.4 3.*"
-
-inherit multilib python eutils versionator java-utils-2
-
-MY_PV="$(replace_all_version_separators _)"
-MY_P="Caver${MY_PV}_pymol_plugin"
-
-DESCRIPTION="Calculation of pathways from buried cavities to outside solvent in protein structures"
-HOMEPAGE="http://loschmidt.chemi.muni.cz/caver/"
-SRC_URI="${MY_P}.zip"
-
-LICENSE="CAVER"
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
- >=virtual/jre-1.6
- sci-chemistry/pymol"
-DEPEND="app-arch/unzip"
-
-RESTRICT="fetch"
-
-S="${WORKDIR}/${MY_P}"/linux_mac
-
-pkg_nofetch() {
- elog "Download ${A}"
- elog "from ${HOMEPAGE}. This requires registration."
- elog "Place tarballs in ${DISTDIR}."
-}
-
-src_prepare() {
- python_copy_sources
-}
-
-src_install() {
- java-pkg_dojar Caver${MY_PV}/*.jar
-
- java-pkg_jarinto /usr/share/${PN}/lib/lib/
- java-pkg_dojar Caver${MY_PV}/lib/*.jar
-
- installation() {
- sed \
- -e "s:directory/where/jar/with/plugin/is/located:${EPREFIX}/usr/share/${PN}/lib/:g" \
- -i Caver${MY_PV}.py || die
-
- insinto $(python_get_sitedir)/pmg_tk/startup/
- doins Caver${MY_PV}.py || die
- }
- python_execute_function -s installation
-}
-
-pkg_postinst() {
- python_mod_optimize pmg_tk/startup/Caver${MY_PV}.py
-}
-
-pkg_postrm() {
- python_mod_cleanup pmg_tk/startup/Caver${MY_PV}.py
-}
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-caver/pymol-plugins-caver-2.1.2.ebuild,v 1.1 2011/03/18 10:22:58 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-caver/pymol-plugins-caver-2.1.2.ebuild,v 1.2 2015/04/15 14:14:33 jlec Exp $
-EAPI="3"
+EAPI=5
-SUPPORT_PYTHON_ABIS="1"
-RESTRICT_PYTHON_ABIS="2.4 3.*"
+PYTHON_COMPAT=( python2_7 )
-inherit multilib python eutils versionator java-utils-2
+inherit multilib python-r1 eutils versionator java-utils-2
MY_PV="$(replace_all_version_separators _)"
MY_P="Caver${MY_PV}_pymol_plugin"
RDEPEND="
>=virtual/jre-1.6
- sci-chemistry/pymol"
+ sci-chemistry/pymol[${PYTHON_USEDEP}]"
DEPEND="app-arch/unzip"
RESTRICT="fetch"
elog "Place tarballs in ${DISTDIR}."
}
-src_prepare() {
- python_copy_sources
-}
-
src_install() {
java-pkg_dojar Caver${MY_PV}/*.jar
java-pkg_dojar Caver${MY_PV}/lib/*.jar
installation() {
- sed \
- -e "s:directory/where/jar/with/plugin/is/located:${EPREFIX}/usr/share/${PN}/lib/:g" \
- -i Caver${MY_PV}.py || die
+ sed \
+ -e "s:directory/where/jar/with/plugin/is/located:${EPREFIX}/usr/share/${PN}/lib/:g" \
+ -i Caver${MY_PV}.py || die
- insinto $(python_get_sitedir)/pmg_tk/startup/
- doins Caver${MY_PV}.py || die
+ python_moduleinto pmg_tk/startup/
+ python_domodule Caver${MY_PV}.py
+ python_optimize
}
- python_execute_function -s installation
-}
-
-pkg_postinst() {
- python_mod_optimize pmg_tk/startup/Caver${MY_PV}.py
-}
-
-pkg_postrm() {
- python_mod_cleanup pmg_tk/startup/Caver${MY_PV}.py
+ python_foreach_impl installation
}
projects / gentoo.git / commitdiff