--- /dev/null
+commit 435d1cbf995a659a82d1d4b42d25e3459556ef21
+Author: Ian Lee <IanLee1521@gmail.com>
+Date: Tue Mar 17 21:52:23 2015 -0700
+
+ Reverted fix for #368 which had unintended repurcussions in flake8 and other places.
+
+ This fix reverts to the parsing of user config (~/.config/pep8), then local directory
+ config files, and finally overrides with cli options as was the behavior back in 1.5.7
+
+diff --git a/CHANGES.txt b/CHANGES.txt
+index 85eb043..5499abd 100644
+--- a/CHANGES.txt
++++ b/CHANGES.txt
+@@ -5,6 +5,12 @@ Changelog
+ 1.6.x (unreleased)
+ ------------------
+
++Changes:
++
++* Reverted the fix in #368, "options passed on command line are only ones
++ accepted" feature. This has many unintended consequences in pep8 and flake8
++ and needs to be reworked when I have more time.
++
+ 1.6.2 (2015-02-15)
+ ------------------
+
+diff --git a/pep8.py b/pep8.py
+index 9f40381..4d993da 100755
+--- a/pep8.py
++++ b/pep8.py
+@@ -1984,24 +1984,24 @@ def read_config(options, args, arglist, parser):
+
+ local_dir = os.curdir
+
++ if USER_CONFIG and os.path.isfile(USER_CONFIG):
++ if options.verbose:
++ print('user configuration: %s' % USER_CONFIG)
++ config.read(USER_CONFIG)
++
++ parent = tail = args and os.path.abspath(os.path.commonprefix(args))
++ while tail:
++ if config.read(os.path.join(parent, fn) for fn in PROJECT_CONFIG):
++ local_dir = parent
++ if options.verbose:
++ print('local configuration: in %s' % parent)
++ break
++ (parent, tail) = os.path.split(parent)
++
+ if cli_conf and os.path.isfile(cli_conf):
+ if options.verbose:
+ print('cli configuration: %s' % cli_conf)
+ config.read(cli_conf)
+- else:
+- if USER_CONFIG and os.path.isfile(USER_CONFIG):
+- if options.verbose:
+- print('user configuration: %s' % USER_CONFIG)
+- config.read(USER_CONFIG)
+-
+- parent = tail = args and os.path.abspath(os.path.commonprefix(args))
+- while tail:
+- if config.read(os.path.join(parent, fn) for fn in PROJECT_CONFIG):
+- local_dir = parent
+- if options.verbose:
+- print('local configuration: in %s' % parent)
+- break
+- (parent, tail) = os.path.split(parent)
+
+ pep8_section = parser.prog
+ if config.has_section(pep8_section):
--- /dev/null
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+PYTHON_COMPAT=( python{2_7,3_3,3_4} pypy pypy3 )
+
+inherit distutils-r1
+
+DESCRIPTION="Python style guide checker"
+HOMEPAGE="https://github.com/jcrocholl/pep8 https://pypi.python.org/pypi/pep8"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~arm ~hppa ~ia64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris"
+IUSE="doc"
+
+DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]
+ doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )"
+RDEPEND="${DEPEND}"
+
+PATCHES=( "${FILESDIR}/${P}-restore-flake8-compatibility.patch" )
+
+python_compile_all() {
+ use doc && emake -C docs html
+}
+
+python_test() {
+ PYTHONPATH="${S}" "${PYTHON}" pep8.py -v --testsuite=testsuite || die
+ PYTHONPATH="${S}" "${PYTHON}" pep8.py --doctest -v || die
+}
+
+python_install_all() {
+ use doc && local HTML_DOCS=( docs/_build/html/. )
+ distutils-r1_python_install_all
+}