Add apbs-0.5.0.

Package-Manager: portage-2.1.2-r9

diff --git a/sci-chemistry/apbs/ChangeLog b/sci-chemistry/apbs/ChangeLog
index 72c40eb5a466da7175352a534d8a572d44a85446..2c4d07b3a2104679f2a8037d2ed58bcbcf43a496 100644 (file)
--- a/sci-chemistry/apbs/ChangeLog
+++ b/sci-chemistry/apbs/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-chemistry/apbs
 # Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.11 2007/01/06 22:21:57 kugelfang Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.12 2007/02/23 17:07:45 je_fro Exp $
+
+*apbs-0.5.0 (23 Feb 2007)
+
+  23 Feb 2007; Jeff Gardner <je_fro@gentoo.org> +apbs-0.5.0.ebuild:
+  Add apbs-0.5.0 with Big Thanks(tm) to Stephen Floor.
 
   06 Jan 2007; Danny van Dyk <kugelfang@gentoo.org> -apbs-0.3.2.ebuild:
   QA: Removed unused versions.

diff --git a/sci-chemistry/apbs/Manifest b/sci-chemistry/apbs/Manifest
index bd4a32c11a10a88876de7d661ca22fc3b952d39a..1c1e08675b8e2ab8b8e25dd8838b9472c84243dd 100644 (file)
--- a/sci-chemistry/apbs/Manifest
+++ b/sci-chemistry/apbs/Manifest
@@ -1,6 +1,3 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 AUX apbs-examples-gentoo.patch 1446 RMD160 f0468219d3295cbaf90de7c0e3489d443f1ea144 SHA1 906197ecc9ee745cb0573ed2798a671cccd7b5a4 SHA256 1b12fdf855c4e80bb6e88d6b9c433a4c18eb406a5a6d1671146be897452863d4
 MD5 43dd7c966e75cdbd40215b3616cfddf5 files/apbs-examples-gentoo.patch 1446
 RMD160 f0468219d3295cbaf90de7c0e3489d443f1ea144 files/apbs-examples-gentoo.patch 1446
@@ -10,14 +7,19 @@ MD5 c54fdb174c6ca236268f3fb45c3c837e files/apbs-gcc4-gentoo.patch 1080
 RMD160 88138dc27c2fa17e558dc3a5c8c41e52bd2f0309 files/apbs-gcc4-gentoo.patch 1080
 SHA256 9077f4ffc41a2af28eed4193a2e56d20b668e2bc280ca2740d3a8803e28c48d6 files/apbs-gcc4-gentoo.patch 1080
 DIST apbs-0.4.0.tar.gz 6490858 RMD160 259c89efed2296eb20af1f8076adc767ef35228c SHA1 f7a5aaefebb545b06f66cb11f229f959060e6c3f SHA256 d1f6637e10b3051e6f618abaa14063f8f9bafbbbad75058645866b606d708acc
+DIST apbs-0.5.0-source-2.tar.gz 10171621 RMD160 31a00f89052cc32d0fdf3272c214f2145ac62067 SHA1 4d3376a62169e3965a2d3b49a2b4b1014bf7721e SHA256 5f99cc6141d34800cf9e93e0e23215b3f740f6e208318698e7011602e1630a08
 EBUILD apbs-0.4.0.ebuild 2280 RMD160 277f2f795e1e720426557f7fa0ce35dd9e7d403e SHA1 8cfe3adf2e3dcb89dccea3dc680c16b4e0ab5d29 SHA256 973ed7316cc0c481ffee964f741d6ee70d266e339c5866eb6ab03066409402c4
 MD5 708463d3385a2b9abdc5785f59282394 apbs-0.4.0.ebuild 2280
 RMD160 277f2f795e1e720426557f7fa0ce35dd9e7d403e apbs-0.4.0.ebuild 2280
 SHA256 973ed7316cc0c481ffee964f741d6ee70d266e339c5866eb6ab03066409402c4 apbs-0.4.0.ebuild 2280
-MISC ChangeLog 1637 RMD160 f67fb69781ced9f445a900fd77db3b8fbe3f110f SHA1 ebdddd0fe5fca00a7b32172592f8bfb47baa90bd SHA256 5d33ab22d4afc9b3b40ccbe8e3071812cd559a00feac8edd8026adcb2933da18
-MD5 4a26c09ad1d66176b2fccfab82c07520 ChangeLog 1637
-RMD160 f67fb69781ced9f445a900fd77db3b8fbe3f110f ChangeLog 1637
-SHA256 5d33ab22d4afc9b3b40ccbe8e3071812cd559a00feac8edd8026adcb2933da18 ChangeLog 1637
+EBUILD apbs-0.5.0.ebuild 1788 RMD160 93a9f0ee264c27878462671ee887ee4d9e74e145 SHA1 b8ce30037e3e817cedbae56cad70502764ecaaef SHA256 127474edc79452cf8f7d0677b3bc81024231f0e029895ade2358bbfbe7a85c39
+MD5 64456e5cb69bf07896265c5baf321c78 apbs-0.5.0.ebuild 1788
+RMD160 93a9f0ee264c27878462671ee887ee4d9e74e145 apbs-0.5.0.ebuild 1788
+SHA256 127474edc79452cf8f7d0677b3bc81024231f0e029895ade2358bbfbe7a85c39 apbs-0.5.0.ebuild 1788
+MISC ChangeLog 1785 RMD160 0a05c6ad8272890a60db7394d4f2d88a14184137 SHA1 621dfb7c62c782c23bbc67ee8d0b36f39aa7a6b7 SHA256 d0f013e18af1965e364d2d4eaa3129852e8f92ce56ed9c869ccaebe3dbabeb18
+MD5 37e2ae75233c1cd868a4b759bdfbadcf ChangeLog 1785
+RMD160 0a05c6ad8272890a60db7394d4f2d88a14184137 ChangeLog 1785
+SHA256 d0f013e18af1965e364d2d4eaa3129852e8f92ce56ed9c869ccaebe3dbabeb18 ChangeLog 1785
 MISC metadata.xml 282 RMD160 539a53475b01291eadb86c8c53a0fbc02b4a34d4 SHA1 7f42dcea44641b8a77ab9644791344ec6ed6c327 SHA256 3c1785eb4ab63774ed3a6b1bddd602ef24cd6795f690bb3289d5a980bca06349
 MD5 cf7436fe44a27481d1001082eb06326e metadata.xml 282
 RMD160 539a53475b01291eadb86c8c53a0fbc02b4a34d4 metadata.xml 282
@@ -25,10 +27,6 @@ SHA256 3c1785eb4ab63774ed3a6b1bddd602ef24cd6795f690bb3289d5a980bca06349 metadata
 MD5 2ef0a41feb8be34beec568bf9fe062d6 files/digest-apbs-0.4.0 235
 RMD160 0606ae9bd4d8f291be73e669911da24e3cc0c457 files/digest-apbs-0.4.0 235
 SHA256 b0c6ba75ae65cac80987484dab6a0c0bb889d01b852c12dd7c4e59e6062f19f9 files/digest-apbs-0.4.0 235
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-
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-HQHZQltenOSbiRPvyFjwgMM=
-=ISMM
------END PGP SIGNATURE-----
+MD5 2e793d5244707356fd7f9ff50ea767c5 files/digest-apbs-0.5.0 265
+RMD160 9aee8d28472d0c967b4eaf0b9db7b7a3c4c40d04 files/digest-apbs-0.5.0 265
+SHA256 dbab309772ba0dcaa2605863678f47c1db4575bb72fb20d31aa4ccee8a7e37ef files/digest-apbs-0.5.0 265

diff --git a/sci-chemistry/apbs/apbs-0.5.0.ebuild b/sci-chemistry/apbs/apbs-0.5.0.ebuild
new file mode 100644 (file)
index 0000000..8cc541e
--- /dev/null
+++ b/sci-chemistry/apbs/apbs-0.5.0.ebuild
@@ -0,0 +1,72 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/apbs-0.5.0.ebuild,v 1.1 2007/02/23 17:07:45 je_fro Exp $
+
+inherit eutils fortran
+
+MY_P="${P}-source-2"
+S="${WORKDIR}"/"${MY_P}"
+
+DESCRIPTION=" Software for evaluating the electrostatic properties of nanoscale biomolecular systems"
+LICENSE="GPL-2"
+HOMEPAGE="http://agave.wustl.edu/apbs/"
+SRC_URI="mirror://sourceforge/${PN}/${MY_P}.tar.gz"
+
+SLOT="0"
+IUSE="blas mpi"
+KEYWORDS="~ppc ~x86 ~amd64"
+
+DEPEND="blas? ( virtual/blas )
+               sys-libs/readline
+               mpi? ( virtual/mpi )"
+
+FORTRAN="g77 gfortran"
+
+pkg_setup() {
+       # It is important that you use the same compiler to compile
+       # APBS that you used when compiling MPI.
+       fortran_pkg_setup
+}
+
+src_unpack() {
+       unpack ${A}
+}
+
+src_compile() {
+
+       # use blas
+       use blas && local myconf="--with-blas=-lblas"
+
+       use mpi && myconf="${myconf} --with-mpiinc=/usr/include"
+
+       econf ${myconf} || die "configure failed"
+
+       # build
+       make DESTDIR=${D} || die "make failed"
+}
+
+src_install() {
+
+       # install apbs binary
+       dobin bin/apbs || die "failed to install apbs binary"
+
+       # remove useless files and install docs
+       find ./examples -name 'test.sh' -exec rm -f {} \; || \
+               die "Failed to remove test.sh files"
+       find ./examples -name 'Makefile*' -exec rm -f {} \; || \
+               die "Failed to remove Makefiles"
+       find ./tools -name 'Makefile*' -exec rm -f {} \; || \
+               die "Failed to remove Makefiles"
+
+       dohtml -r doc/index.html doc/programmer doc/tutorial \
+               doc/user-guide doc/license || \
+                       die "Failed to install html docs"
+
+       insinto /usr/share/doc/${PF}/examples
+       doins -r examples/* || \
+               die "Failed to install examples"
+
+       insinto /usr/share/${PF}/tools
+       doins -r tools/* || die "failed to install tools"
+
+}

diff --git a/sci-chemistry/apbs/files/digest-apbs-0.5.0 b/sci-chemistry/apbs/files/digest-apbs-0.5.0
new file mode 100644 (file)
index 0000000..00ed5b6
--- /dev/null
+++ b/sci-chemistry/apbs/files/digest-apbs-0.5.0
@@ -0,0 +1,3 @@
+MD5 80b201d182536cb5f914a23fca4a4732 apbs-0.5.0-source-2.tar.gz 10171621
+RMD160 31a00f89052cc32d0fdf3272c214f2145ac62067 apbs-0.5.0-source-2.tar.gz 10171621
+SHA256 5f99cc6141d34800cf9e93e0e23215b3f740f6e208318698e7011602e1630a08 apbs-0.5.0-source-2.tar.gz 10171621