-DIST hdf5-1.10.1.tar.bz2 11769617 BLAKE2B 66ad762aed90cea9e58a9735bf0e189d78befc40cac0e566586e967f2b3ba6f5bf8a6bfd12a2f4062f8b20900c16d467c34134c17dedfd8f345cb96bd853a2fe SHA512 266b0e2f28c5fd540099a4955244ddb8c03aca3ad40d626358643f033a6ae5e9266a1d6c1d60925c7d42d24d28a1549d3305fe8ddb42cec2379af7231b93e554
DIST hdf5-1.10.5.tar.bz2 8706317 BLAKE2B ac326be8fe4ccc4b0153f15bc7d65aa8f1adc2ae279d3980f57ed46722b754d3f36ecf1d6273c75e80ed1afd4bbf10c6b1c5d9408e1f83a4b2e397e7902a7d3c SHA512 769e43b8672e26fe24ed68da0228c010d3d9bc950ca09f0bc60707911a2f26f2f8415c8abc8ec06e07667148d8cdb3b0c7b3e7860d9b19739629c5dfd5ce73d4
-DIST hdf5-1.8.18.tar.bz2 10081294 BLAKE2B cf0d0c8a41576bcf816460eaabcfab29cfffba240721a64fe584c42fbb322470f29fb93c8513f7bbdedeeb392c2fe64cd3261b47b47de5b01828dae0b1929cd3 SHA512 01f6d14bdd3be2ced9c63cc9e1820cd7ea11db649ff9f3a3055c18c4b0fffe777fd23baad536e3bce31c4d76fe17db64a3972762e1bb4d232927c1ca140e72b2
+++ /dev/null
---- a/hl/src/H5LTanalyze.c
-+++ b/hl/src/H5LTanalyze.c
-@@ -40,6 +40,7 @@
- #include <string.h>
- #include <errno.h>
- #include <stdlib.h>
-+#include <unistd.h>
-
- /* end standard C headers. */
-
---- a/hl/src/H5LTanalyze.l
-+++ b/hl/src/H5LTanalyze.l
-@@ -16,6 +16,7 @@
- %{
- #include <stdlib.h>
- #include <string.h>
-+#include <unistd.h>
- #include <hdf5.h>
- #include "H5LTparse.h"
-
---- a/test/cache_common.h
-+++ b/test/cache_common.h
-@@ -702,5 +702,8 @@ void validate_mdc_config(hid_t file_id,
- hbool_t compare_init,
- int test_num);
-
-+hbool_t resize_configs_are_equal(const H5C_auto_size_ctl_t *a,
-+ const H5C_auto_size_ctl_t *b,
-+ hbool_t compare_init);
- #endif /* _CACHE_COMMON_H */
-
---- a/testpar/t_span_tree.c
-+++ b/testpar/t_span_tree.c
-@@ -37,6 +37,9 @@
- #include "hdf5.h"
- #include "H5private.h"
- #include "testphdf5.h"
-+#define H5S_PACKAGE
-+#define H5S_TESTING
-+#include "H5Spkg.h"
-
-
- static void coll_write_test(int chunk_factor);
+++ /dev/null
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-FORTRAN_NEEDED=fortran
-AUTOTOOLS_AUTORECONF=1
-
-inherit autotools-utils eutils fortran-2 flag-o-matic toolchain-funcs multilib versionator prefix
-
-MY_P=${PN}-${PV/_p/-patch}
-MAJOR_P=${PN}-$(get_version_component_range 1-2 ${PV})
-
-DESCRIPTION="General purpose library and file format for storing scientific data"
-HOMEPAGE="http://www.hdfgroup.org/HDF5/"
-SRC_URI="http://www.hdfgroup.org/ftp/HDF5/releases/${MAJOR_P}/${MY_P}/src/${MY_P}.tar.bz2"
-
-LICENSE="NCSA-HDF"
-SLOT="0/${PV%%_p*}"
-KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux"
-IUSE="cxx debug examples fortran +hl mpi static-libs szip threads zlib"
-
-REQUIRED_USE="
- cxx? ( !mpi ) mpi? ( !cxx )
- threads? ( !cxx !mpi !fortran !hl )"
-
-RDEPEND="
- mpi? ( virtual/mpi[romio] )
- szip? ( virtual/szip )
- zlib? ( sys-libs/zlib:0= )"
-
-DEPEND="${RDEPEND}
- sys-devel/libtool:2
- >=sys-devel/autoconf-2.69"
-
-S="${WORKDIR}/${MY_P}"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-1.8.9-static_libgfortran.patch
- "${FILESDIR}"/${PN}-1.8.9-mpicxx.patch
- "${FILESDIR}"/${PN}-1.8.13-no-messing-ldpath.patch
-)
-
-pkg_setup() {
- tc-export CXX CC AR # workaround for bug 285148
- use fortran && fortran-2_pkg_setup
-
- if use mpi; then
- if has_version 'sci-libs/hdf5[-mpi]'; then
- ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail."
- ewarn "Try to uninstall the current hdf5 prior to enabling mpi support."
- fi
- export CC=mpicc
- use fortran && export FC=mpif90
- elif has_version 'sci-libs/hdf5[mpi]'; then
- ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail."
- ewarn "Try to uninstall the current hdf5 prior to disabling mpi support."
- fi
-}
-
-src_prepare() {
- # respect gentoo examples directory
- sed \
- -e "s:hdf5_examples:doc/${PF}/examples:g" \
- -i $(find . -name Makefile.am) $(find . -name "run*.sh.in") || die
- sed \
- -e '/docdir/d' \
- -i config/commence.am || die
- if ! use examples; then
- sed -e '/^install:/ s/install-examples//' \
- -i Makefile.am || die #409091
- fi
- # enable shared libs by default for h5cc config utility
- sed -i -e "s/SHLIB:-no/SHLIB:-yes/g" tools/src/misc/h5cc.in || die
- hprefixify m4/libtool.m4
- autotools-utils_src_prepare
-}
-
-src_configure() {
- local myeconfargs=(
- --docdir="${EPREFIX}"/usr/share/doc/${PF}
- --enable-deprecated-symbols
- $(use debug && echo --enable-build-mode=debug || echo --enable-build-mode=production)
- $(use_enable debug codestack)
- $(use_enable cxx)
- $(use_enable fortran)
- $(use_enable hl)
- $(use_enable mpi parallel)
- $(use_enable threads threadsafe)
- $(use_with szip szlib)
- $(use_with threads pthread)
- $(use_with zlib)
- )
- autotools-utils_src_configure
-}
+++ /dev/null
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-FORTRAN_NEEDED=fortran
-AUTOTOOLS_AUTORECONF=1
-
-inherit autotools-utils eutils fortran-2 flag-o-matic toolchain-funcs multilib
-
-MY_P=${PN}-${PV/_p/-patch}
-
-DESCRIPTION="General purpose library and file format for storing scientific data"
-HOMEPAGE="http://www.hdfgroup.org/HDF5/"
-#SRC_URI="https://support.hdfgroup.org/ftp/HDF5/releases/${MY_P}/src/${MY_P}.tar.bz2"
-# TODO: return to proper SRC_URI once upstream fixes their release
-SRC_URI="https://support.hdfgroup.org/ftp/HDF5/current18/src/${MY_P}.tar.bz2"
-
-LICENSE="NCSA-HDF"
-SLOT="0/${PV%%_p*}"
-KEYWORDS="alpha amd64 ~arm ~arm64 ia64 ppc ppc64 sparc x86 ~x86-fbsd ~amd64-linux ~x86-linux"
-IUSE="cxx debug examples fortran fortran2003 +hl mpi static-libs szip threads zlib"
-
-REQUIRED_USE="
- threads? ( !cxx !mpi !fortran !hl )
- fortran2003? ( fortran )"
-
-RDEPEND="
- mpi? ( virtual/mpi[romio] )
- szip? ( virtual/szip )
- zlib? ( sys-libs/zlib:0= )"
-
-DEPEND="${RDEPEND}
- sys-devel/libtool:2
- >=sys-devel/autoconf-2.69"
-
-S="${WORKDIR}/${MY_P}"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-1.8.9-static_libgfortran.patch
- "${FILESDIR}"/${PN}-1.8.9-mpicxx.patch
- "${FILESDIR}"/${PN}-1.8.13-no-messing-ldpath.patch
- "${FILESDIR}"/${PN}-1.8.15-implicits.patch
-)
-
-pkg_setup() {
- tc-export CXX CC AR # workaround for bug 285148
- if use fortran; then
- use fortran2003 && FORTRAN_STANDARD=2003
- fortran-2_pkg_setup
- fi
- if use mpi; then
- if has_version 'sci-libs/hdf5[-mpi]'; then
- ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail."
- ewarn "Try to uninstall the current hdf5 prior to enabling mpi support."
- fi
- export CC=mpicc
- use fortran && export FC=mpif90
- if use cxx ; then
- export CXX=mpicxx
- ewarn "USE='mpi cxx' requires a configuration unsupported by upstream. Use at your own risk."
- ewarn "In particular, the C++ API is not parallel safe."
- fi
- elif has_version 'sci-libs/hdf5[mpi]'; then
- ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail."
- ewarn "Try to uninstall the current hdf5 prior to disabling mpi support."
- fi
-}
-
-src_prepare() {
- # respect gentoo examples directory
- sed \
- -e "s:hdf5_examples:doc/${PF}/examples:g" \
- -i $(find . -name Makefile.am) $(find . -name "run*.sh.in") || die
- sed \
- -e '/docdir/d' \
- -i config/commence.am || die
- if ! use examples; then
- sed -e '/^install:/ s/install-examples//' \
- -i Makefile.am || die #409091
- fi
- # enable shared libs by default for h5cc config utility
- sed -i -e "s/SHLIB:-no/SHLIB:-yes/g" tools/misc/h5cc.in || die
- # bug #419677
- use prefix && \
- append-ldflags -Wl,-rpath,"${EPREFIX}"/usr/$(get_libdir) \
- -Wl,-rpath,"${EPREFIX}"/$(get_libdir)
- autotools-utils_src_prepare
-}
-
-src_configure() {
- local myeconfargs=(
- --enable-production
- --docdir="${EPREFIX}"/usr/share/doc/${PF}
- --enable-deprecated-symbols
- $(use_enable prefix sharedlib-rpath)
- $(use_enable debug debug all)
- $(use_enable debug codestack)
- $(use_enable cxx)
- $(use_enable fortran)
- $(use_enable fortran2003)
- $(use_enable hl)
- $(use_enable mpi parallel)
- $(use_enable threads threadsafe)
- $(use_with szip szlib)
- $(use_with threads pthread)
- $(use_with zlib)
- $(use mpi && use cxx && echo --enable-unsupported)
- )
- autotools-utils_src_configure
-}
than 2 GB, and supports parallel I/O.
</longdescription>
<use>
- <flag name="fortran2003">Enable new features that require Fortran 2003
- (http://www.hdfgroup.org/HDF5/doc/fortran/NewFeatures_F2003.pdf)</flag>
- <flag name="hl">Enable high level API
- (https://support.hdfgroup.org/HDF5/doc/HL/index.html)</flag>
+ <flag name="hl">Enable high level API (https://support.hdfgroup.org/HDF5/doc/HL/index.html)</flag>
</use>
</pkgmetadata>
projects / gentoo.git / commitdiff