Fix occasional failures with parallel install, bug #322965

Package-Manager: portage-2.2_rc67/cvs/Linux x86_64

diff --git a/dev-lang/R/ChangeLog b/dev-lang/R/ChangeLog
index 67c9d4fe68f4c53c14b9fa0654d8e895c306e8be..3c2f7da67aee1bdc2aae8a0bfebe109fc761f772 100644 (file)
--- a/dev-lang/R/ChangeLog
+++ b/dev-lang/R/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for dev-lang/R
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/dev-lang/R/ChangeLog,v 1.177 2010/06/01 18:55:08 bicatali Exp $
+# $Header: /var/cvsroot/gentoo-x86/dev-lang/R/ChangeLog,v 1.178 2010/06/16 15:36:14 bicatali Exp $
+
+  16 Jun 2010; Sébastien Fabbro <bicatali@gentoo.org> -R-2.11.0.ebuild,
+  R-2.11.1.ebuild, +files/R-2.11.1-parallel.patch:
+  Fix occasional failures with parallel install, bug #322965
 
 *R-2.11.1 (01 Jun 2010)
 

diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 42bcb1ac1edd778d7ab3338881fa11f13da90125..1c75826681054ae5219d9d25c2d5bd510dc0e93a 100644 (file)
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,19 +1,18 @@
 -----BEGIN PGP SIGNED MESSAGE-----
 Hash: SHA1
 
+AUX R-2.11.1-parallel.patch 488 RMD160 d693776b4650bc151f977f7c75234e582ad379c1 SHA1 02ea92a7ef3c2b87a9b1f3c929cb8eb828cd06db SHA256 d17c52fcda732908954aa4bbf690085402a4027ef905bc456e5101602e2bcf4f
 DIST R-2.10.1.tar.gz 19705604 RMD160 7acf060192f205da4731d0ea3c2cc318b65b7e91 SHA1 f5b1969fde3642c233f5198e44a7bf17a7b85ab6 SHA256 5ca1780d9f47f2f4a9b52ba44fed9ee6e7d3547f18ed2c05192b0dbc56038e9d
-DIST R-2.11.0.tar.gz 19779908 RMD160 358d5ba19bd534e9f5be56f517bd217c235599dc SHA1 86af359879afaf18bf0cd9ca36f2957d7b146ba3 SHA256 9b2a1769cdf21ad00500cbc0a1f7e09c872681d2ca0ea592e7692f15ff980a43
 DIST R-2.11.1.tar.gz 19729300 RMD160 a5223a3f784ad0f808d893d82a4e0a130c9a9b3a SHA1 0b36780627f3cc5cea3f41e0b717ed7ee92ba086 SHA256 48c1b96426f5b588763652b0b633cadccf410bae34300c22fd40524662bc23bb
 DIST R.bash_completion.bz2 4019 RMD160 796951fb32e9ea4074dcd5ba3da5955ec0193993 SHA1 05ddebef0df16f0bf35aecc8fcb702ad5d106e5e SHA256 424790f7be27a0aad7b65289c97cb15d2ca9ee272f30f3e5c906217e487c7f85
 EBUILD R-2.10.1.ebuild 4078 RMD160 135e9344cf5de1ca710f216822075ffc35dc3b0e SHA1 e58976ba3ffb4473f120d293c036e97114e02908 SHA256 2296760ff1357e60475cff72c7715e92fcfc50ec2c3271b9d5a9b094123b2e6e
-EBUILD R-2.11.0.ebuild 4040 RMD160 e07c5cf6ebe8efb12d172feae7898948c2a54929 SHA1 20b8739961d325080fdeb70b406f131261bceb4f SHA256 1dea2cbd708ca4c53d231462df79691ae9ec5bb28027530b07816ca9e17578d7
-EBUILD R-2.11.1.ebuild 4040 RMD160 5b71abde6752e62a015a58e9593e5dfc5c6fe0f1 SHA1 b570eb780437bc062a13dbcfb05af3a8301e3585 SHA256 a3620c213093e54b02e8ae58b96fbf26a17cdf96ebffce50b425c16762e6dc2b
-MISC ChangeLog 25578 RMD160 e3fcec7be42455301f774c817d183da5e0bb982b SHA1 d21953686edb148f73685e75b927138183e018da SHA256 1b36c0432803d3df6f95986bf52c545fbc13cc69612c7eb3e358d57184670bcd
+EBUILD R-2.11.1.ebuild 4144 RMD160 23e9f44bb0df82ca9d5fdb494d0a9484cfe811d7 SHA1 44cc4e41f8d0747565fd96b89dfa1eb5cdf89bfd SHA256 f3c5e1cacfa0866e538fe8445013675cbe3c9241457eddce758d11a268860ee5
+MISC ChangeLog 25764 RMD160 332ff15db6832ab0d2db169a9f14e454919fed80 SHA1 405a2f70b9f40ad3026783a6f4680b837b4822f7 SHA256 bd88a791a19cbdffa0f7ec22e223fb8f83ea2d40cdb156a65e2dd624871c311e
 MISC metadata.xml 1031 RMD160 375436b81f2969a32b673a47fdcd7a8ddadb6fa3 SHA1 fefc629218f970fc24f6b4e30c482112ea6e6129 SHA256 6f692bb80f78dfd8987ae3f70c12c40924ef5e0596267d928953f37f44223968
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0.15 (GNU/Linux)
 
-iEYEARECAAYFAkwFYD0ACgkQ1ycZbhPLE2Da0wCeJCuDZBVNxeec80G7i/dZZK+O
-wtAAn1apZV3SKQ9g8UgRXb8S7GA02TfO
-=qO1B
+iEYEARECAAYFAkwY73cACgkQ1ycZbhPLE2BCbACfZ7uz44fzTD3dEGlsY4u4Rt7X
+8uMAoKkLsA6eLwqspGZbDuv/n5akRiLL
+=+UFJ
 -----END PGP SIGNATURE-----

diff --git a/dev-lang/R/R-2.11.0.ebuild b/dev-lang/R/R-2.11.0.ebuild
deleted file mode 100644 (file)
index 59ccb16..0000000
--- a/dev-lang/R/R-2.11.0.ebuild
+++ /dev/null
@@ -1,153 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/dev-lang/R/R-2.11.0.ebuild,v 1.1 2010/04/28 00:28:47 bicatali Exp $
-
-EAPI=2
-inherit eutils flag-o-matic bash-completion versionator
-
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="http://www.r-project.org/"
-SRC_URI="mirror://cran/src/base/R-2/${P}.tar.gz
-       bash-completion? ( mirror://gentoo/R.bash_completion.bz2 )"
-
-LICENSE="GPL-2 LGPL-2.1"
-SLOT="0"
-KEYWORDS="~alpha ~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd"
-
-IUSE="doc java jpeg lapack minimal nls perl png readline threads tk X cairo"
-
-# common depends
-CDEPEND="dev-libs/libpcre
-       app-arch/bzip2
-       virtual/blas
-       app-text/ghostscript-gpl
-       cairo? ( x11-libs/cairo[X]
-               || ( >=x11-libs/pango-1.20[X] <x11-libs/pango-1.20 ) )
-       jpeg? ( media-libs/jpeg )
-       lapack? ( virtual/lapack )
-       perl? ( dev-lang/perl )
-       png? ( media-libs/libpng )
-       readline? ( sys-libs/readline )
-       tk? ( dev-lang/tk )
-       X? ( x11-libs/libXmu x11-misc/xdg-utils )"
-
-DEPEND="${CDEPEND}
-       dev-util/pkgconfig
-       doc? ( virtual/latex-base
-         || ( dev-texlive/texlive-fontsrecommended
-                  app-text/ptex ) )"
-
-RDEPEND="${CDEPEND}
-       app-arch/unzip
-       app-arch/zip
-       java? ( >=virtual/jre-1.5 )"
-
-RESTRICT="minimal? ( test )"
-
-R_DIR=/usr/$(get_libdir)/${PN}
-
-pkg_setup() {
-       filter-ldflags -Wl,-Bdirect -Bdirect
-       # avoid using existing R installation
-       unset R_HOME
-}
-
-src_prepare() {
-       # fix packages.html for doc (bug #205103)
-       # check in later versions if fixed
-       sed -i \
-               -e "s:../../library:../../../../$(get_libdir)/R/library:g" \
-               src/library/tools/R/packageshtml.R \
-               || die "sed failed"
-
-       # fix Rscript
-       sed -i \
-               -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \
-               src/unix/Makefile.in || die "sed unix Makefile failed"
-
-       # fix HTML links to manual (bug #273957)
-       sed -i -e 's:\.\./manual/:manual/:g' $(grep -Flr ../manual/ doc) \
-               || die "sed for HTML links to manual failed"
-
-       use lapack && \
-               export LAPACK_LIBS="$(pkg-config --libs lapack)"
-
-       if use X; then
-               export R_BROWSER="$(type -p xdg-open)"
-               export R_PDFVIEWER="$(type -p xdg-open)"
-       fi
-       use perl && \
-               export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-}
-
-src_configure() {
-       econf \
-               --enable-R-profiling \
-               --enable-memory-profiling \
-               --enable-R-shlib \
-               --with-system-zlib \
-               --with-system-bzlib \
-               --with-system-pcre \
-               --with-blas="$(pkg-config --libs blas)" \
-               --docdir=/usr/share/doc/${PF} \
-               rdocdir=/usr/share/doc/${PF} \
-               $(use_enable nls) \
-               $(use_enable threads) \
-               $(use_with lapack) \
-               $(use_with tk tcltk) \
-               $(use_with jpeg jpeglib) \
-               $(use_with !minimal recommended-packages) \
-               $(use_with png libpng) \
-               $(use_with readline) \
-               $(use_with cairo) \
-               $(use_with X x)
-}
-
-src_compile(){
-       emake || die "emake failed"
-       RMATH_V=0.0.0
-       emake -C src/nmath/standalone \
-               libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.${RMATH_V} \
-               || die "emake math library failed"
-       if use doc; then
-               export VARTEXFONTS="${T}/fonts"
-               emake info pdf || die "emake docs failed"
-       fi
-}
-
-src_install() {
-       emake DESTDIR="${D}" install || die "emake install failed"
-
-       if use doc; then
-               emake DESTDIR="${D}" \
-                       install-info install-pdf || die "emake install docs failed"
-               dosym /usr/share/doc/${PF}/manual /usr/share/doc/${PF}/html/manual
-       fi
-
-       # standalone math lib install (-j1 basically harmless)
-       emake \
-               -C src/nmath/standalone \
-               DESTDIR="${D}" install \
-               || die "emake install math library failed"
-
-       local mv=$(get_major_version ${RMATH_V})
-       mv  "${D}"/usr/$(get_libdir)/libRmath.so \
-               "${D}"/usr/$(get_libdir)/libRmath.so.${RMATH_V}
-       dosym libRmath.so.${RMATH_V} /usr/$(get_libdir)/libRmath.so.${mv}
-       dosym libRmath.so.${mv} /usr/$(get_libdir)/libRmath.so
-
-       # env file
-       cat > 99R <<-EOF
-               LDPATH=${R_DIR}/lib
-               R_HOME=${R_DIR}
-       EOF
-       doenvd 99R || die "doenvd failed"
-       dobashcompletion "${WORKDIR}"/R.bash_completion
-}
-
-pkg_postinst() {
-       if use java; then
-               einfo "Re-initializing java paths for ${P}"
-               R CMD javareconf
-       fi
-}

diff --git a/dev-lang/R/R-2.11.1.ebuild b/dev-lang/R/R-2.11.1.ebuild
index 73e8fd4e442881f1b07ec63923726460d30be0f9..a165420ec00c20a4c4419d8fcb67e2fe8496eefb 100644 (file)
--- a/dev-lang/R/R-2.11.1.ebuild
+++ b/dev-lang/R/R-2.11.1.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2010 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/dev-lang/R/R-2.11.1.ebuild,v 1.1 2010/06/01 18:55:08 bicatali Exp $
+# $Header: /var/cvsroot/gentoo-x86/dev-lang/R/R-2.11.1.ebuild,v 1.2 2010/06/16 15:36:14 bicatali Exp $
 
 EAPI=2
 inherit eutils flag-o-matic bash-completion versionator
@@ -53,6 +53,9 @@ pkg_setup() {
 }
 
 src_prepare() {
+       # fix ocasional failure with parallel install (bug #322965)
+       epatch "${FILESDIR}"/${P}-parallel.patch
+
        # fix packages.html for doc (bug #205103)
        # check in later versions if fixed
        sed -i \

diff --git a/dev-lang/R/files/R-2.11.1-parallel.patch b/dev-lang/R/files/R-2.11.1-parallel.patch
new file mode 100644 (file)
index 0000000..92b187e
--- /dev/null
+++ b/dev-lang/R/files/R-2.11.1-parallel.patch
@@ -0,0 +1,11 @@
+--- src/include/Makefile.in.orig       2010-06-15 18:18:54.000000000 +0000
++++ src/include/Makefile.in    2010-06-15 18:19:48.000000000 +0000
+@@ -81,7 +81,7 @@
+ Rmath.h0: $(srcdir)/Rmath.h0.in $(top_builddir)/config.status
+       @cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
+ 
+-install: installdirs install-intl-@USE_INCLUDED_LIBINTL@
++install: $(OBJ_HEADERS) installdirs install-intl-@USE_INCLUDED_LIBINTL@
+       @for d in $(SUBDIRS); do \
+         (cd $${d} && $(MAKE) $@) || exit 1; \
+       done